Stars
A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.
Mutations in half or more of sequences for pango-designated SARS-CoV-2 lineages
Projects on COVID-19 topic of genomic sequencing - mostly DataViz
A library of free open source icons for science illustrations in biology and chemistry
This repo collects the list of learning online resources related to microbiome computational science and tools.
21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
One Health Summer Institute's Introduction to Bioinformatics workshop. Session on Bioinformatics for AMR Research.
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
A pipeline for running AMRfinderPlus and collating results into functional classes
Collection of bioinformatics training materials
Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info
All data used in the GenEpi-BioTrain Virtual Training 7 session on march 19-20, 2024
🔬 Path to a free self-taught education in Bioinformatics!
An introduction to python programming for Biologists and Bioinformaticians
Datasets for https://github.com/nextstrain/nextclade
A web platform to detect and analyze variants of SARS-CoV-2
Repository for automated flagging of new lineages for pango designation.
Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
Data on prevalence of variants of concern in Aotearoa New Zealand
Repository for suggesting new lineages that should be added to the current scheme
Informal summaries of notable SARS-CoV-2 lineages