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A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.

172 40 Updated Feb 27, 2025

Mutations in half or more of sequences for pango-designated SARS-CoV-2 lineages

1 Updated Feb 27, 2025

Projects on COVID-19 topic of genomic sequencing - mostly DataViz

Python 52 Updated Feb 25, 2025

A library of free open source icons for science illustrations in biology and chemistry

Vue 1,424 81 Updated Feb 27, 2025

A 'ggplot2' Extension for Consistent Axis Alignment

R 263 8 Updated Feb 25, 2025

This repo collects the list of learning online resources related to microbiome computational science and tools.

81 11 Updated Nov 14, 2024

21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

Jupyter Notebook 71,576 37,252 Updated Feb 25, 2025

Introduction to Bash for bioinformatics

42 12 Updated Aug 9, 2024

One Health Summer Institute's Introduction to Bioinformatics workshop. Session on Bioinformatics for AMR Research.

3 Updated Jun 18, 2021

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

C++ 293 45 Updated Feb 21, 2025

A pipeline for running AMRfinderPlus and collating results into functional classes

Python 73 14 Updated Aug 19, 2024

Collection of bioinformatics training materials

Python 1,006 184 Updated Feb 23, 2025
Python 8 Updated Nov 20, 2023

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

Jupyter Notebook 6 2 Updated Feb 12, 2025

All data used in the GenEpi-BioTrain Virtual Training 7 session on march 19-20, 2024

Python 5 Updated Mar 20, 2024

My youtube programming scripts

HTML 52 17 Updated Jan 16, 2025

🔬 Path to a free self-taught education in Bioinformatics!

5,814 972 Updated Apr 8, 2024

An introduction to python programming for Biologists and Bioinformaticians

Jupyter Notebook 6 3 Updated Feb 27, 2025

Interface to ChatGPT from R

R 320 37 Updated Jan 31, 2025

Ultrafast Sample Placement on Existing Trees

C++ 124 42 Updated Nov 22, 2024

Datasets for https://github.com/nextstrain/nextclade

Python 33 27 Updated Feb 25, 2025

A web platform to detect and analyze variants of SARS-CoV-2

TypeScript 61 14 Updated Feb 17, 2025

Repository for automated flagging of new lineages for pango designation.

Python 5 Updated Mar 22, 2023

Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater

20 5 Updated Feb 20, 2025

Data on prevalence of variants of concern in Aotearoa New Zealand

11 5 Updated Feb 22, 2024

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook 1,045 100 Updated Feb 27, 2025

Informal summaries of notable SARS-CoV-2 lineages

108 12 Updated Feb 27, 2025
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