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/Users/johnmccallum/Dropbox/BSA_RNASEQ/HRM_design_2/galaxy-pcr-markers/vcf2gvf.py in <module>()
52 if info_field[0]=='INDEL':
53 info_field[0]="TYPE=INDEL"
---> 54 info_dict=dict(X.split('=') for X in info_field)
55 ##if no TYPE key, then add TYPE=SNP for samtools case
56 if not info_dict.has_key('TYPE'):
ValueError: dictionary update sequence element #0 has length 1; 2 is required
The text was updated successfully, but these errors were encountered:
Code relies on INFO field being present and fails in cases like:
Giving
The text was updated successfully, but these errors were encountered: