Releases: cggh/panoptes
2.0.alpha5
Fifth alpha release of the Panoptes 2.0 series.
Continuing to redesign and reimplement the UI to reach parity with v1.6.2, improving user experience and future development prospects.
This release includes:
Fixes:
- #401 - Data-driven dropdown menus now fall back to a faster native control when options exceed 100.
- #320 - Lists of tables now all honour the isHidden setting.
- #389 - The filter picker now updates query values on column selection, and handles criterion removal.
#402 - Circles are now drawn for pie charts when all chart values are null.- #420 - Popup windows can now be resized.
- #422 - The background colours of data table cells now reflect their value where appropriate, instead of black.
- #394 - The "Find Gene By Region" feature now requires user initiation, instead of searching automatically.
- #391 - Table downloads are now limited to 1000000 data points, instead of allowing requests that break.
- #379 - Display is now limited to a minimum of 750 pixels wide, otherwise a message is shown.
Features:
2.0.alpha4
Fourth alpha release of the Panoptes 2.0 series.
Continuing to redesign and reimplement the UI to reach parity with v1.6.2, improving user experience and future development prospects.
This release includes:
Fixes:
- #417 - The Dataset Manager GUI should now work on the Ag1000G demo box.
Features:
- #415 - Managers can now name and store filters (table queries), for all to use. Managers can also now overwrite the default filter with any stored filter, and also delete any stored filter.
2.0.alpha3
Third alpha release of the Panoptes 2.0 series.
Continuing to redesign and reimplement the UI to reach parity with v1.6.2, improving user experience and future development prospects.
This release includes:
Fixes:
- #390 - The text field for searching lists is now treated as case-insensitive, so "finds" finds "Finds".
- #396 - The z-index for draggable tab headers has now been fixed, so it always stays on top.
- #398 - The Query Picker for the per-row indicator channel is now populated with the current query.
- #399 - The reference sequence now has a "Majority base over window" in its legend.
- #400 - The Genome Browser no longer says "WTF", so we're getting serious.
- #403 - Session IDs are now passed through in production mode.
- #406 - Component updates are not fired if they are not needed; no more double dispatch errors.
- #411 - Variants are no longer placed on the join between ref bases in the reference sequence.
- #412 - History handling has now been fixed, so the back button now behaves like a back button.
Features:
- A list of recently used queries, so users can reuse them.
- A dataset management interface, so dataset managers can re-import datasets via the web GUI.
2.0.alpha2
Second alpha release of the Panoptes 2.0 series.
Continuing to redesign and reimplement the UI to reach parity with v1.6.2, improving user experience and future development prospects.
This release includes:
- Remove scale dependance from genome track that indicates position of variants
- Improved efficiency and performance on data fetching
- Improved visualisation of indicator-dense genomic regions
- Updated documentation for import settings
- Fixed tests for importing settings
- Updated example sample data settings for geographic datasets
- Tests for importing sample data settings
- Tests for converting YAML and JSON formats in sample data settings
2.0.alpha1
Early alpha release of the Panoptes 2.0 series.
- UI Re-designed and re-implemented to improve both user experience and futire development prospects
- Aiming for rough feature parity with 1.6.2 by beta
Panoptes 1.6.2
Incremental 1.6 release
Major changes:
- Default queries for tables
- Settings validation
- Bugfixes
Panoptes 1.6.1
Incremental release for 1.6
Panoptes 1.6
Highlights
- Import reworked for speed and can use MPI clusters for parallel summary track creation
- Categorical reference tracks
- UI Improvements
- So many bugfixes
ATTENTION
The location of the python virtualenv has been moved from "build/virtualenv" to "build/panoptes_virtualenv" to make it compatible with other tools. You may need to update your webserver config if you are serving panoptes through one.
Full list of issues for this release: https://github.com/cggh/panoptes/issues?q=milestone%3A1.6+is%3Aclosed
Panoptes 1.5.1
This is an incremental bugfix release for 1.5.
List of closed issues:
https://github.com/cggh/panoptes/issues?q=is%3Aclosed+is%3Aissue+milestone%3A1.5.1+
Panoptes 1.5
Highlights of this release:
Tree loading and display
- Load from Newick format
- Interactive and linkable to other data like genome regions
Genotype Browser
- Switch between allele depths and calls
- VCF loading examples
- Sort samples by genotypes
Subsets
- Define your own subsets of the data
- Use them in queries
- Shared with other users
UI
- Complete refresh
- Template-based views for friendly presentation of data (e.g. studies/people)
- Find a genome region
- Link to any data item from another website
Documentation
- http://panoptes.readthedocs.org/
- Popups and links throughout the app
Data
- Better GFF loading
- GTF support
Bugs and Robustness
- Lots!
Full list of issues for this release: https://github.com/cggh/panoptes/issues?q=milestone%3A1.5+is%3Aclosed
