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HapCall: Consider adding -forceActive and -dontTrimActiveRegions simultaneously to reduce false negatives #10

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cgpu opened this issue Dec 30, 2019 · 0 comments
Open

HapCall: Consider adding -forceActive and -dontTrimActiveRegions simultaneously to reduce false negatives #10

cgpu opened this issue Dec 30, 2019 · 0 comments

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@cgpu
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cgpu commented Dec 30, 2019 •
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HaplotypeCaller: minPruning = depth / 500 rescues some false negatives
broadinstitute/gatk#3697

Update:

There's more to it check here:

image
@cgpu cgpu changed the title HaplotypeCaller: minPruning = depth / 500 rescues some false negatives HapCall: Consider adding -forceActive and -dontTrimActiveRegions simultaneously to reduce false negatives Dec 30, 2019
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