Data to reproduce experiments of the MinYS paper

MinYS: Mine Your Symbiont by targeted genome assembly in symbiotic communities Guyomar C, Delage W, Legeai F, Mougel C, Simon JC, Lemaitre C BioRxiv 2019, doi:10.1101/2019.12.13.875021

This folder contains the data and/or links to get the data used in the paper:

folder files_of_files/ contains a text file for each sample giving the path to fastq sequencing files on the GenOuest cluster.
folder reference_genomes/ contains the 4 Buchnera aphidicola reference genomes used in the paper
individuals.list and pool.list contain the names of the individual (resp. pool) samples
sra_identifiers.tsv contains the SRA identifiers of all sequencing files.

Additionnally a synthetic sequencing dataset has been produced to perform the "strain coexisentce" result. Reads are available at this link : https://data-access.cesgo.org/index.php/s/0drzRw2dBt637Ob.

Note : they can also be re-generated (but not reproduced exactly) using the protocol described in ../scripts/strain_coexistence.md.