diff --git a/.github/workflows/compatibility_tests.yml b/.github/workflows/compatibility_tests.yml
index 0f3885958..4d2691418 100644
--- a/.github/workflows/compatibility_tests.yml
+++ b/.github/workflows/compatibility_tests.yml
@@ -7,6 +7,10 @@ on:
branches:
- main
+ # For debug - uncomment below to run on all PRs
+ pull_request:
+ branches: "*"
+
env:
JEST_ENV: prod
@@ -28,13 +32,14 @@ jobs:
strategy:
fail-fast: false
matrix:
+ # note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`)
os: [ubuntu-latest, macos-latest, macos-13]
- python-version: ["3.10", "3.11", "3.12"]
+ python-version: ["3.10", "3.11"]
cellxgene_build: [main, latest]
# add anndata pinned version test for subset of matrix configurations,
# in order to reduce matrix cross-product explosion
include:
- - python-version: 3.12
+ - python-version: 3.11
cellxgene_build: latest
# TODO: dynamically use the literal version in requirements.txt,
# to avoid having to update this in manually in the future
@@ -95,7 +100,7 @@ jobs:
# keep same pip pkg versions as in the cxg release
sed -i'' -e 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
- pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas flatbuffers==2.0.7
+ pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas
- name: Install anndata version per matrix variable
run: pip install anndata${{ matrix.anndata_version }}
- name: Install node
diff --git a/README.md b/README.md
index 3686a0d61..bd81fd9d9 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-
+
_an interactive explorer for single-cell transcriptomics data_
@@ -11,7 +11,8 @@ CZ CELLxGENE Annotate (pronounced "cell-by-gene") is an interactive data explore
Whether you need to visualize one thousand cells or one million, CELLxGENE Annotate helps you gain insight into your single-cell data.
-
+
+
# Getting started
@@ -27,7 +28,7 @@ Whether you need to visualize one thousand cells or one million, CELLxGENE Annot
### Quick start
-To install CELLxGENE Annotate you need Python 3.10+. We recommend [installing Annotate into a conda or virtual environment.](https://github.com/chanzuckerberg/cellxgene-documentation/blob/main/desktop/install.md)
+_To install CELLxGENE Annotate you need Python 3.10+_. We recommend [installing Annotate into a conda or virtual environment.](https://github.com/chanzuckerberg/cellxgene-documentation/blob/main/desktop/install.md)
Install the package.