short-read-mngs-full-benchmarks.yml

name: short-read-mngs full benchmarks
# Launch full-scale short-read-mngs benchmarks for a given point release of czid-workflows. Uses
# GitHub API to trigger them asynchronously on the czid-dev backend.

on:
  workflow_dispatch:
    inputs:
      czid_workflows_release:
        description: release (vX.Y.Z) of czid-workflows short-read-mngs
      index_version:
        description: version (YYYY-MM-DD) of the ncbi index to use
      czid_ref:
        description: desired git ref in czid monorepo
        default: main

env:
  GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
  GH_DEPLOY_TOKEN: ${{secrets.GH_DEPLOY_TOKEN}}
  DEBIAN_FRONTEND: noninteractive
  GH_CLI_VERSION: 1.7.0
  LC_ALL: C.UTF-8
  LANG: C.UTF-8

jobs:
  trigger_benchmarks:
    runs-on: ubuntu-22.04
    steps:
      - name: Checkout
        uses: actions/checkout@v2
        with:
          fetch-depth: 0
      - name: Install release script dependencies
        run: |
          source /etc/profile
          sudo apt-get -qq update
          sudo apt-get -qq install -o=Dpkg::Use-Pty=0 --yes jq moreutils gettext httpie git curl
          curl -OLs https://github.com/cli/cli/releases/download/v${GH_CLI_VERSION}/gh_${GH_CLI_VERSION}_linux_amd64.deb
          sudo dpkg -i gh_${GH_CLI_VERSION}_linux_amd64.deb
      # Note: the triggered action will use the current revision of the BENCHMARKING code in this
      # repo (env.GITHUB_SHA). However, it will run the vX.Y.Z point release of the short-read-mngs
      # WORKFLOW code specified in the user inputs.
      - name: Trigger benchmarks
        run: |
          export DEPLOY_REF='${{github.event.inputs.czid_ref}}' GITHUB_TOKEN=${GH_DEPLOY_TOKEN:-GITHUB_TOKEN} CZID_WORKFLOWS_RELEASE='${{github.event.inputs.czid_workflows_release}}' INDEX_VERSION='${{github.event.inputs.index_version}}'
          workflow_args=$(jq -n ".ref=env.DEPLOY_REF | .inputs={czid_workflows_release: env.CZID_WORKFLOWS_RELEASE, index_version: env.INDEX_VERSION, czid_workflows_ref: env.GITHUB_SHA}")
          gh api repos/:owner/idseq/actions/workflows/short-read-mngs-benchmarks.yml/dispatches --input - <<< "$workflow_args"