diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl
index 13479deeb..410e9e394 100644
--- a/workflows/long-read-mngs/run.wdl
+++ b/workflows/long-read-mngs/run.wdl
@@ -1303,7 +1303,7 @@ workflow czid_long_read_mngs {
         String? diamond_db
         String diamond_args = "--long-reads --sensitive"
 
-        String diamond_wdl_version = "v1.0.0"
+        String diamond_wdl_version = "v1.1.0"
         String minimap2_wdl_version = "v1.0.0"
 
         Boolean use_deuterostome_filter = true
diff --git a/workflows/short-read-mngs/non_host_alignment.wdl b/workflows/short-read-mngs/non_host_alignment.wdl
index 826784b9c..017955e62 100644
--- a/workflows/short-read-mngs/non_host_alignment.wdl
+++ b/workflows/short-read-mngs/non_host_alignment.wdl
@@ -307,7 +307,7 @@ workflow czid_non_host_alignment {
     String minimap2_prefix = "gsnap"
     String diamond_prefix = "rapsearch2"
     String minimap2_wdl_version = "v1.0.0"
-    String diamond_wdl_version = "v1.0.0"
+    String diamond_wdl_version = "v1.1.0"
 
   }
   call RunAlignment_minimap2_out {