From d0968866b548de56dfde1851546ac091f2a2bccd Mon Sep 17 00:00:00 2001 From: phoenixAja Date: Mon, 12 Feb 2024 10:01:17 -0800 Subject: [PATCH] more chunks for minimap --- workflows/index-generation/index-generation.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/index-generation/index-generation.wdl b/workflows/index-generation/index-generation.wdl index 961a2691d..d62a2b378 100644 --- a/workflows/index-generation/index-generation.wdl +++ b/workflows/index-generation/index-generation.wdl @@ -373,7 +373,7 @@ task GenerateIndexMinimap2 { Int w = 8 # Minimizer window size default is 11 for short reads option String I = "9999G" # Load at most NUM target bases into RAM for indexing Int t = 20 # number of threads, doesn't really work for indexing I don't think - Int n_chunks = 20 + Int n_chunks = 50 String docker_image_id }