From d909c7c77f5dfd5496433e871c7e64296035e223 Mon Sep 17 00:00:00 2001
From: phoenixAja <plogan@chanzuckerberg>
Date: Fri, 5 Apr 2024 10:54:54 -0700
Subject: [PATCH] add cargo test to index-generation test

---
 Makefile | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index 9c209085b..47fa3bf42 100644
--- a/Makefile
+++ b/Makefile
@@ -56,11 +56,15 @@ release:
 	scripts/release.sh
 
 test-%: ## run miniwdl step tests eg. make test-short-read-mngs
+    @if [ "$*" = "index-generation" ]; then \
+        echo "Running cargo test for index-generation"; \
+        (cd workflows/$*/ncbi-compress && cargo test); \
+    fi
 	pytest -v -n $$(( $$(nproc) - 1)) --durations=0 --tb=short --log-cli-level=11 workflows/$*/test
 
 integration-test-%: ## run miniwdl integration tests eg. make integration-test-short-read-mngs
 	pytest -v -n $$(( $$(nproc) - 1)) --durations=0 --tb=short --log-cli-level=11 workflows/$*/integration_test
-	
+
 .PHONY: test
 test: ## run miniwdl step tests for all workflows eg. make test
 	for i in $$(ls workflows); do $(MAKE) test-$$i; done