Installation

Installation

Dependencies

• Nextflow
• Singularity

Installation

1. Install and add to $PATH Singularity:

   How to install singularity.

2. Install and add to $PATH Nextflow:

   How to install nextflow.

3. Clone the SIMPLI repository to the desired folder:

   git clone https://github.com/ciccalab/SIMPLI.git PATH_TO_DESIRED_FOLDER

HERE ADD PART ABOUT RUNNING DIRECtLY FROM GITHUB WITH NEXTFLOW (WILL WORK ONLY WHEN THE REPOSITORY GOES PUBLIC) https://www.nextflow.io/docs/latest/sharing.html#publishing-your-pipeline

Test

An example workflow can be run as a test with:

ADD RUN EXAMPLE CODE HERE