Installation

Installation

Dependencies

• Singularity
• Nextflow

SIMPLI relies on Nextflow DSL2 syntax and requires nextflow >= 20.07.1

Installation

1. Install Singularity and add it to $PATH:

   How to install singularity.

2. Install Nextflow and add it to $PATH:

   How to install nextflow.

3. Clone the SIMPLI repository to the desired folder:

   git clone https://github.com/ciccalab/SIMPLI.git PATH_TO_DESIRED_FOLDER

In alternative, the most recent version of SIMPLI be downloaded and run from directly from this repository with:

nextflow run https://github.com/ciccalab/SIMPLI [COMMAND_LINE_ARGUMENTS] [NEXTFLOW_OPTIONS]

See the Nextflow documentation for more details.

Test

An example workflow can be run as a test with:

nextflow main.nf -profile test From the directory SIMPLI is installed in.

See the example analysis page for more details.