NAMESPACE

# Generated by roxygen2: do not edit by hand

export(NEONMICROBE_DIR_BASE)
export(NEONMICROBE_DIR_BATCHES)
export(NEONMICROBE_DIR_MIDPROCESS)
export(NEONMICROBE_DIR_OUTPUTS)
export(NEONMICROBE_DIR_SEQMETA)
export(NEONMICROBE_DIR_SEQUENCE)
export(NEONMICROBE_DIR_SOIL)
export(NEONMICROBE_DIR_TAXREF)
export(NEONMICROBE_DIR_TRACKREADS)
export(collapseNoMismatch2)
export(combineReadTrackingTables16S)
export(combineReadTrackingTablesITS)
export(downloadRawSequenceData)
export(downloadRawSoilData)
export(downloadSequenceMetadata)
export(downloadSoilData)
export(getBatch)
export(getBatchParam)
export(getPairedFastqFiles)
export(getSampleName)
export(getTruncationLength)
export(listBatches)
export(loadParams)
export(makeDataDirectories)
export(matchFastqToMetadata)
export(newBatch)
export(organizeRawSequenceData)
export(parseParamsFromRownames)
export(plotEEProfile)
export(qcMetadata)
export(qualityFilter16S)
export(qualityFilterITS)
export(removeUnpairedFastqFiles)
export(remove_unmatched_files)
export(runDada16S)
export(runDadaITS)
export(saveParams)
export(setBaseDirectory)
export(setBatch)
export(setBatchParam)
export(trimPrimers16S)
export(trimPrimersITS)
importFrom(magrittr,"%>%")