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hra-v1.4-metadata.json
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[
{
"type": "2d-ftu",
"name": "asct-b-2d-models-crosswalk",
"version": "v1.2",
"title": "Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Functional Tissue Unit (FTU) Reference Object Library Crosswalk",
"description": "This lookup table maps [Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Table](https://humanatlas.io/asctb-tables) terms to anatomical structure and cell type terms used in the [CCF-2D-reference-object-library](https://humanatlas.io/2d-ftu-illustrations).",
"creators": [
{
"fullName": "Supriya Bidanta",
"firstName": "Supriya",
"lastName": "Bidanta",
"orcid": "0000-0002-2142-983X"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Ellen M. Quardokus",
"firstName": "Ellen",
"lastName": "Quardokus",
"orcid": "0000-0001-7655-4833"
},
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
},
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
},
{
"fullName": "Bruce W. Herr II",
"firstName": "Bruce",
"lastName": "Herr",
"orcid": "0000-0002-6703-7647"
}
],
"externalReviewers": [],
"creation_date": "2023-06-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM565.DVKX.367",
"doi": "https://doi.org/10.48539/HBM565.DVKX.367",
"citation": "Supriya Bidanta (2023). *Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Functional Tissue Unit (FTU) Reference Object Library Crosswalk, v1.2*, https://doi.org/10.48539/HBM565.DVKX.367) Accessed on June 15, 2023.",
"citationOverall": "Supriya Bidanta; Rachel Bajema; Ellen M. Quardokus; Bruce W. Herr II; Katy Börner. 2023. [*HuBMAP CCF 2D Reference Object Library*](https://humanatlas.io/2d-ftu-illustrations). Accessed on June 15, 2023.",
"datatable": [
"asct-b-2d-models-crosswalk.csv"
]
},
{
"type": "2d-ftu",
"name": "asct-b-2d-models-mapping",
"version": "v1.1",
"title": "ASCT+B 2D FTU Mapping",
"description": "This lookup table maps [Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Table](https://hubmapconsortium.github.io/ccf/pages/ccf-anatomical-structures.html) terms to anatomical structure and cell type terms used in the [CCF-2D-reference-object-library](https://github.com/hubmapconsortium/ccf-2d-reference-object-library).",
"creators": [
{
"fullName": "Supriya Bidanta",
"firstName": "Supriya",
"lastName": "Bidanta",
"orcid": "0000-0002-2142-983X"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Ellen M. Quardokus",
"firstName": "Ellen",
"lastName": "Quardokus",
"orcid": "0000-0001-7655-4833"
},
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
},
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
},
{
"fullName": "Bruce W. Herr II",
"firstName": "Bruce",
"lastName": "Herr",
"orcid": "0000-0002-6703-7647"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM266.FLTT.686",
"doi": "https://doi.org/10.48539/HBM266.FLTT.686",
"citation": "Supriya Bidanta; Fauzan Isnaini. (2022). *Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Reference Object Library Mapping*, v1.1, https://doi.org/10.48539/HBM266.FLTT.686 Accessed on December 15, 2022.",
"citationOverall": "Supriya Bidanta; Fauzan Isnaini; Rachel Bajema; Ellen M. Quardokus; Bruce W. Herr II; Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-object-library.html). Accessed on December 15, 2022.",
"datatable": [
"asct-b-2d-models-mapping.csv"
]
},
{
"type": "2d-ftu",
"name": "asctb-mapping",
"version": "Mapping",
"title": "ASCT+B 2D FTU",
"description": "This lookup table maps [Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Table](https://hubmapconsortium.github.io/ccf/pages/ccf-anatomical-structures.html) terms to anatomical structure and cell type terms used in the [CCF-2D-reference-object-library](https://github.com/hubmapconsortium/ccf-2d-reference-object-library).",
"creators": [
{
"fullName": "Supriya Bidanta",
"firstName": "Supriya",
"lastName": "Bidanta",
"orcid": "0000-0002-2142-983X"
},
{
"fullName": "Fauzan Isnaini",
"firstName": "Fauzan",
"lastName": "Isnaini",
"orcid": "0000-0001-6582-4041"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Ellen M. Quardokus",
"firstName": "Ellen",
"lastName": "Quardokus",
"orcid": "0000-0001-7655-4833"
},
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
},
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
},
{
"fullName": "Bruce W. Herr II",
"firstName": "Bruce",
"lastName": "Herr",
"orcid": "0000-0002-6703-7647"
}
],
"externalReviewers": [],
"creation_date": "2022-05-06",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM984.MZSG.873",
"doi": "https://doi.org/10.48539/HBM984.MZSG.873",
"citation": "Supriya Bidanta; Fauzan Isnaini. (2022). *Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Reference Object Library Mapping* [https://doi.org/10.48539/HBM984.MZSG.873](https://doi.org/10.48539/HBM984.MZSG.873). Accessed on May 06, 2022.",
"citationOverall": "Supriya Bidanta; Fauzan Isnaini; Rachel Bajema; Ellen M. Quardokus; Bruce W. Herr II; Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-object-library.html). Accessed on May 06, 2022.",
"datatable": [
"ASCT-B_ftu_2D_illustration_mapping.csv"
]
},
{
"type": "2d-ftu",
"name": "kidney-ascending-thin-loop-of-henle",
"version": "v1.0",
"title": "2D Ascending Thin Limb of Loop of Henle FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the ascending thin limb of loop of Henle FTU in the ASCT+B Table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM252.GXZL.248",
"doi": "https://doi.org/10.48539/HBM252.GXZL.248",
"citation": "Rachel Bajema 2022. *2D Reference Ascending Thin Limb of Loop of Henle FTU for Kidney, v1.0.* https://doi.org/10.48539/HBM252.GXZL.248. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-ascending-thin-loop-of-henle.svg",
"2d-ftu-kidney-ascending-thin-loop-of-henle.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-cortical-collecting-duct",
"version": "v1.0",
"title": "2D Cortical Collecting Duct FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the cortical collecting duct FTU in the Anatomical Structures, Cell Types and Biomarkers table in the [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM773.GJPC.954",
"doi": "https://doi.org/10.48539/HBM773.GJPC.954",
"citation": "Rachel Bajema 2022. *2D Reference Cortical Collecting Duct FTU for Kidney, v1.0.* https://doi.org/10.48539/HBM773.GJPC.954 . Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-cortical-collecting-duct.svg",
"2d-ftu-kidney-cortical-collecting-duct.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-descending-thin-loop-of-henle",
"version": "v1.0",
"title": "2D Descending Thin Limb of Loop of Henle FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the descending thin limb of loop of Henle FTU in the Anatomical Structures, Cell Types and Biomarkers table in the ASCT+B Table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM752.FQRT.755",
"doi": "https://doi.org/10.48539/HBM752.FQRT.755",
"citation": "Rachel Bajema 2022. *2D Reference Descending Thin Limb of Loop of Henle FTU for Kidney, v1.0.* https://doi.org/10.48539/HBM752.FQRT.755. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-descending-thin-loop-of-henle.svg",
"2d-ftu-kidney-descending-thin-loop-of-henle.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-inner-medullary-collecting-duct",
"version": "v1.0",
"title": "2D Inner Medullary Collecting Duct FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the inner medullary collecting duct FTU in the Anatomical Structures, Cell Types and Biomarkers table in the [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM835.WLXG.458",
"doi": "https://doi.org/10.48539/HBM835.WLXG.458",
"citation": "Rachel Bajema 2022. *2D Reference Inner Medullary Collecting Duct FTU for Kidney, v1.0.* https://doi.org/10.48539/HBM835.WLXG.458. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-inner-medullary-collecting-duct.svg",
"2d-ftu-kidney-inner-medullary-collecting-duct.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-nephron",
"version": "v1.0",
"title": "2D Nephron Functional Tissue Unit (FTU) for Kidney",
"description": "This functional tissue unit (FTU) illustration was created from anatomical structures and cell types listed in the ASCT+B Table [Kidney v1.1](https://hubmapconsortium.github.io/ccf-releases/v1.1/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired and heavily influenced by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Sources for determining diameter include [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-05-06",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM489.SGQZ.655",
"doi": "https://doi.org/10.48539/HBM489.SGQZ.655",
"citation": "Rachel Bajema 2022. *2D Reference Nephron FTU for Kidney, v1.0.* [https://doi.org/10.48539/HBM489.SGQZ.655](https://doi.org/10.48539/HBM489.SGQZ.655). Accessed on May 6, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on May 6, 2022.",
"datatable": [
"nephron_kidney.svg"
]
},
{
"type": "2d-ftu",
"name": "kidney-nephron",
"version": "v1.1",
"title": "2D Nephron Functional Tissue Unit (FTU) for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the nephron FTU in the ASCT+B Table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM868.LLHZ.223",
"doi": "https://doi.org/10.48539/HBM868.LLHZ.223",
"citation": "Rachel Bajema 2022. *2D Reference Nephron FTU for Kidney, v1.1.* [https://doi.org/10.48539/HBM868.LLHZ.223](https://doi.org/10.48539/HBM868.LLHZ.223). Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-nephron.svg",
"2d-ftu-kidney-nephron.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-outer-medullary-collecting-duct",
"version": "v1.0",
"title": "2D Outer Medullary Collecting Duct FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the outer medullary collecting duct FTU in the Anatomical Structures, Cell Types and Biomarkers table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM337.SZDB.254",
"doi": "https://doi.org/10.48539/HBM337.SZDB.254",
"citation": "Rachel Bajema 2022. *2D Reference Outer Medullary Collecting Duct FTU for Kidney, v1.0.* https://doi.org/10.48539/HBM337.SZDB.254. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-outer-medullary-collecting-duct.svg",
"2d-ftu-kidney-outer-medullary-collecting-duct.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-renal-corpuscle",
"version": "v1.0",
"title": "2D Renal Corpuscle Functional Tissue Unit (FTU) for Kidney",
"description": "This functional tissue unit (FTU) illustration was created from anatomical structures and cell types listed in the ASCT+B Table [Kidney v1.1](https://hubmapconsortium.github.io/ccf-releases/v1.1/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired and heavily influenced by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Also helpful was “The CIBA Collection of Medical Illustrators: Volume 6. Kidneys, Ureters, and Urinary Bladder” (Frank H. Netter, 1979.)",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-05-06",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM395.LVFN.656",
"doi": "https://doi.org/10.48539/HBM395.LVFN.656",
"citation": "Rachel Bajema 2022. *2D Reference Renal Corpuscle FTU for Kidney, v1.0.* [https://doi.org/10.48539/HBM395.LVFN.656](https://doi.org/10.48539/HBM395.LVFN.656). Accessed on May 6, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on May 6, 2022.",
"datatable": [
"renal_corpuscle_kidney.svg"
]
},
{
"type": "2d-ftu",
"name": "kidney-renal-corpuscle",
"version": "v1.1",
"title": "2D Renal Corpuscle Functional Tissue Unit (FTU) for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the renal corpuscle FTU in the ASCT+B Table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM848.QQPG.278",
"doi": "https://doi.org/10.48539/HBM848.QQPG.278",
"citation": "Rachel Bajema 2022. *2D Reference Renal Corpuscle FTU for Kidney, v1.1.* https://doi.org/10.48539/HBM848.QQPG.278. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-renal-corpuscle.svg",
"2d-ftu-kidney-renal-corpuscle.ai"
]
},
{
"type": "2d-ftu",
"name": "kidney-thick-ascending-loop-of-henle",
"version": "v1.0",
"title": "2D Thick Ascending Limb of Loop of Henle FTU for Kidney",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the thick ascending limb of loop of Henle FTU in the ASCT+B Table [Kidney v1.2](https://hubmapconsortium.github.io/ccf-releases/v1.2/asct-b/ASCT-B_VH_Kidney.csv). This illustration was inspired by the [Kidney Tissue Atlas Explorer](https://atlas.kpmp.org/explorer/)created by the Kidney Precision Medicine Project (KPMP). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Cell type diameters were primarily defined by [(Hu, McDonough, and Layton 2021)](https://doi.org/10.1016/j.isci.2021.102667).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-857"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Sanjay Jain",
"firstName": "Sanjay",
"lastName": "Jain",
"orcid": "0000-0003-2804-127X"
},
{
"fullName": "Matthias Kretzler",
"firstName": "Matthias",
"lastName": "Kretzler",
"orcid": "0000-0003-4064-0582"
},
{
"fullName": "M. Todd Valerius",
"firstName": "M.",
"lastName": "Valerius",
"orcid": "0000-0001-8143-9231"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM856.XGXM.529",
"doi": "https://doi.org/10.48539/HBM856.XGXM.529",
"citation": "Rachel Bajema 2022. *2D Reference Thick Ascending Limb of Loop of Henle FTU, v1.0.* https://doi.org/10.48539/HBM856.XGXM.529. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-kidney-thick-ascending-loop-of-henle.svg",
"2d-ftu-kidney-thick-ascending-loop-of-henle.ai"
]
},
{
"type": "2d-ftu",
"name": "large-intestine-crypt-lieberkuhn",
"version": "v1.0",
"title": "2D Crypt of Lieberkuhn FTU for Large Intestine",
"description": "This functional tissue unit (FTU) illustration was created from anatomical structures and cell types listed in the ASCT+B Table [Large Intestine v1.1](https://doi.org/10.48539/HBM325.NZPB.589). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Measurements were taken from [(Baker et al. 2014)](https://doi.org/10.1016/j.celrep.2014.07.019).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "John Hickey",
"firstName": "John",
"lastName": "Hickey",
"orcid": "0000-0001-5675-3974"
},
{
"fullName": "Yiing Lin",
"firstName": "Yiing",
"lastName": "Lin",
"orcid": "0000-0002-0317-7608"
}
],
"externalReviewers": [],
"creation_date": "2022-05-06",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM373.JRGS.542",
"doi": "https://doi.org/10.48539/HBM373.JRGS.542",
"citation": "Rachel Bajema 2022. *2D Crypt of Lieberkuhn FTU for Large Intestine, v1.0* [https://doi.org/10.48539/HBM373.JRGS.542](https://doi.org/10.48539/HBM373.JRGS.542). Accessed on May 6, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on May 6, 2022.",
"datatable": [
"crypt_lieberkuhn_large_intestine.svg"
]
},
{
"type": "2d-ftu",
"name": "large-intestine-crypt-lieberkuhn",
"version": "v1.1",
"title": "2D Crypt of Lieberkuhn FTU for Large Intestine",
"description": "This functional tissue unit (FTU) illustration includes cell types related to the Crypt of Lieberkuhn FTU in the Anatomical Structures, Cell Types and Biomarkers table [Large Intestine v1.2](https://doi.org/10.48539/HBM325.NZPB.589). Multiple histology atlases, especially “Netter’s Essential Histology with Correlated Histopathology” (William K. Ovalle and Patrick C. Nahirney, 2021), “Junqueira’s Basic Histology Text & Atlas” (Anthony L. Mescher, 2021), “Human Microscopic Anatomy” (R.V. Krstić, 1994), and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Measurements were taken from [(Baker et al. 2014)](https://doi.org/10.1016/j.celrep.2014.07.019).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "John Hickey",
"firstName": "John",
"lastName": "Hickey",
"orcid": "0000-0001-5675-3974"
},
{
"fullName": "Yiing Lin",
"firstName": "Yiing",
"lastName": "Lin",
"orcid": "0000-0002-0317-7608"
}
],
"externalReviewers": [],
"creation_date": "2022-12-15",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM344.NWFX.797",
"doi": "https://doi.org/10.48539/HBM344.NWFX.797",
"citation": "Rachel Bajema 2022. *2D Crypt of Lieberkuhn FTU for Large Intestine, v1.1* https://doi.org/10.48539/HBM344.NWFX.797. Accessed on December 15, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on December 15, 2022.",
"datatable": [
"2d-ftu-large-intestine-crypt-lieberkuhn.svg",
"2d-ftu-large-intestine-crypt-lieberkuhn.ai"
]
},
{
"type": "2d-ftu",
"name": "liver-liver-lobule",
"version": "v1.0",
"title": "2D Liver Lobule Functional Tissue Unit (FTU) for Liver",
"description": "This functional tissue unit (FTU) illustration was created from anatomical structures and cell types listed in the ASCT+B Table [Liver v1.0](https://doi.org/10.48539/HBM476.BQCC.574). Multiple histology atlases, especially “Human Microscopic Anatomy” (R.V. Krstić, 1994) and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Measurements were taken from [(Hall et al. 2017)](https://doi.org/10.1038/srep40977).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Anna Maria Masci",
"firstName": "Anna",
"lastName": "Masci",
"orcid": "0000-0003-1940-6740"
},
{
"fullName": "Tim Kendall",
"firstName": "Tim",
"lastName": "Kendall",
"orcid": "0000-0002-4174-2786"
},
{
"fullName": "Ayako Suzuki",
"firstName": "Ayako",
"lastName": "Suzuki",
"orcid": "0000-0003-1824-1067"
}
],
"externalReviewers": [],
"creation_date": "2022-05-06",
"license": "Creative Commons Attribution 4.0 International ([CC BY 4.0](https://creativecommons.org/licenses/by/4.0/))",
"publisher": "HuBMAP",
"funders": [
{
"funder": "National Institutes of Health",
"awardNumber": "OT2OD026671"
}
],
"hubmapId": "HBM692.KXMT.939",
"doi": "https://doi.org/10.48539/HBM692.KXMT.939",
"citation": "Rachel Bajema 2022. *2D Liver Lobule Functional Tissue Unit (FTU) for Liver, v1.0.* [https://doi.org/10.48539/HBM692.KXMT.939](https://doi.org/10.48539/HBM692.KXMT.939). Accessed on May 6, 2022.",
"citationOverall": "Rachel Bajema, Supriya Bidanta, Ellen Quardokus, Bruce W. Herr II, Katy Börner. 2022. [*HuBMAP CCF 2D Reference Object Library*](https://hubmapconsortium.github.io/ccf/pages/ccf-2d-reference-library.html). Accessed on May 6, 2022.",
"datatable": [
"liver_lobule_liver.svg"
]
},
{
"type": "2d-ftu",
"name": "liver-liver-lobule",
"version": "v1.1",
"title": "2D Liver Lobule Functional Tissue Unit (FTU) for Liver",
"description": "This functional tissue unit (FTU) illustration was created from anatomical structures and cell types listed in the ASCT+B Table [Liver v1.1](https://doi.org/10.48539/HBM456.SLDZ.399). Multiple histology atlases, especially “Netter’s Essential Histology with Correlated Histopathology” (William K. Ovalle and Patrick C. Nahirney, 2021), “Junqueira’s Basic Histology Text & Atlas” (Anthony L. Mescher, 2021), “Human Microscopic Anatomy” (R.V. Krstić, 1994), and “Histology: A Text and Atlas” (Michael H. Ross, et al., 2003) were referenced. Measurements were taken from [(Hall et al. 2017)](https://doi.org/10.1038/srep40977).",
"creators": [
{
"fullName": "Rachel Bajema",
"firstName": "Rachel",
"lastName": "Bajema",
"orcid": "0000-0002-3775-8574"
}
],
"project_leads": [
{
"fullName": "Katy Börner",
"firstName": "Katy",
"lastName": "Börner",
"orcid": "0000-0002-3321-6137"
}
],
"reviewers": [
{
"fullName": "Anna Maria Masci",
"firstName": "Anna",
"lastName": "Masci",
"orcid": "0000-0003-1940-6740"
},
{