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.gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
*.Rproj
*.html
/SMBKC/data
/SMBKC/smbkc_19/data
/SMBKC/smbkc_18a/model_4/figure
/SMBKC/smbkc_18a
/SMBKC/smbkc_19/model_1a/figure
/SMBKC/smbkc_19/model_1a/compare
*.docx
*.pdf
/SMBKC/smbkc_19/model_1c
/SMBKC/smbkc_19/model_1d
/SMBKC/smbkc_19/model_1e
/SMBKC/smbkc_19/model_1f
/SMBKC/smbkc_19/model_1g
/SMBKC/smbkc_19/model_1h
/SMBKC/smbkc_19/model_1i
/SMBKC/smbkc_19/model_1j
/SMBKC/smbkc_19/model_1k
/SMBKC/smbkc_19/model_6
/SMBKC/smbkc_19/temp
/SMBKC/smbkc_19/doc/deprecated
/SMBKC/smbkc_19a/depricated_models
/PIGKC/data_katie
/PIGKC/gmacs
## borrowed from GMACS gitignore
*~
*.swp
*.swo
# API files
html/
docs/api/html/
# Latex files
*.aux
*.fdb_latexmk
*.fls
#*.out
*.nav
*.toc
*.snm
*.vrb
*.tex.bak
*.bak
auto/
# R files
rsconnect/
.Rproj.user
*.Rproj
*.Rout
*.R~
.RData
.Rhistory
*.Rmd.bak
Rplots.pdf
# ADMB build files
#GMACS/src/lib/*.obj
#GMACS/src/lib/*
#GMACS/src/build/*
#GMACS/src/include/*
#GMACS/src/gmacs.cpp
#GMACS/src/gmacs.exe
#GMACS/src/gmacs.htp
#GMACS/src/gmacs.obj
#GMACS/src/moltIncrement.cpp
#*.cpp
#*.obj
*.exe
# ADMB standard output files
*.b0*
*.bar
*.cor
*.cov
*.dep
*.ecm
*.eva
gradient.*
*.hes
*.log
*.mc2
*.mcm
*.p0*
*.psv
*.hst
*.r0*
*.std
*.tmp
*_in.ctl
*_in.dat
variance
sims
# katie specific
SMBKC/*.rep
SMBKC/smbkc_19/model_1/*.rep
SMBKC/smbkc_19/model_1/initial_run
SMBKC/smbkc_19/model_1/initial_run_old_dat_file
SMBKC/smbkc_19/model_1/proj_2018
SMBKC/smbkc_19/model_1/proj_2019
SMBKC/smbkc_19/model_1/projections/proj_1/aa/*.rep
SMBKC/smbkc_19/model_1/projections/proj_1/d/*.rep
SMBKC/smbkc_19/model_1/projections/proj_2/aa/*.rep
SMBKC/smbkc_19/model_1/projections/proj_2/abc/*.rep
GMACS/src_fixedR/build
GMACS/src_fixedR/include
GMACS/src_fixedR/lib
GMACS/src_fixedR/*.bat
GMACS/src_fixedR/Makefile
GMACS/src_fixedR/gmacs.tpl
GMACS/src_fixedR/personal.TPL
SMBKC/smbkc_20/data/*.zip
SMBKC/smbkc_20/data/smbkc_data_output
SMBKC/smbkc_20/model_1/*.rep
SMBKC/smbkc_20/model_2/*.rep
SMBKC/smbkc_20/model_1_app3a/*.rep
SMBKC/smbkc_20/model_1_app3_low/*.rep
SMBKC/smbkc_20/model_1_app3_high/*.rep
SMBKC/smbkc_20/model_1_copy