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PhosTF

Simulation and inference of networks of gene regulation with Protein Kinase, Transcription Factor and gene elements. Most functions can be called through simulation.jl and inference.jl.

REQUIRMENTS

  • Julia. Currently on 1.7.1. Problems testing on 1.7.2.

INSTALL

  • Run ./install.sh which sets command git root
  • Either run ./install.jl or ./install_instantiate.jl which installs Julia dependencies as newest versions or as tested versions, respectively.
  • Auto-detect environment at startup by adding startup.jl to ~/.julia/config/startup.jl, e.g. by running cat startup.jl >> ~/.julia/config/startup.jl