problem with simulation from user specified location

[marysalvana]

Hi,

I get this error when trying to simulate from my own .txt file

[mls23007@cn559 codes]$ Rscript generating_spatial_from_data.R 
[starpu][check_bus_config_file] No performance model for the bus, calibrating...
[starpu][check_bus_config_file] ... done
		 ** Initialize ExaGeoStat hardware **
		 ** ExaGeoStat data generation/loading **
		 	Data is read from ./synthetic_data.txt successfully.

 *** caught segfault ***
address (nil), cause 'unknown'

Traceback:
 1: .External(list(name = "InternalFunction_invoke", address = <pointer: 0x2cfce40>,     dll = list(name = "Rcpp", path = "/home/mls23007/R/x86_64-redhat-linux-gnu-library/4.3/Rcpp/libs/Rcpp.so",         dynamicLookup = TRUE, handle = <pointer: 0x39c0a50>,         info = <pointer: 0x2d71e20>), numParameters = -1L), <pointer: 0x3d55390>,     kernel, initial_theta, distance_matrix, problem_size, seed,     dts, lts, dimension, log_path, data_path, observations_file,     recovery_file)
 2: simulate_data(kernel = kernel, initial_theta = initial_theta,     problem_size = 10000, dts = dts, dimension = dimension, data_path = data_path)
An irrecoverable exception occurred. R is aborting now ...

Here is my code:

library(assertthat)
library("ExaGeoStatCPP")

# Variables
computation <- "exact"
ncores <- 63
ngpus <- 0
p <- 1
q <- 1

hardware <- new(Hardware, computation, ncores, ngpus, p, q)

kernel <- "univariate_matern_stationary"
initial_theta <- c(1,0.1,0.5)
dts <- 360   #360 -560 -760 -960
dimension = "2D"

data_path <- "./synthetic_data.txt"

# Time the simulation with small size

start_time <- Sys.time()
exageostat_data <- simulate_data(kernel=kernel, initial_theta=initial_theta, problem_size=10000, dts=dts, dimension=dimension, data_path=data_path)
end_time <- Sys.time()

time_taken <- end_time - start_time
seconds_taken <- as.numeric(time_taken, units="secs")
print(paste("Time taken for 10000 locations:", seconds_taken, "seconds, using ", ncores, " cores."))

I am attaching synthetic_data.txt below.

Thank you!

synthetic_data.txt