testing.yml

name: build

on:
  push:
  pull_request:

jobs:
 numerics:
   runs-on: ubuntu-latest

   continue-on-error: true

   steps:

     - name: Checkout
       uses: actions/checkout@v2.2.0
       with:
        submodules: 'true'

     - name: Set up compilers and libraries
       run: |
         sudo apt-get update
         sudo apt-get -qq install gfortran
         sudo apt-get install libopenmpi-dev
         sudo apt-get install openmpi-bin
         sudo apt-get install imagemagick
         pip install scipy
         pip install numpy
         pip install pandas
         pip install xarray
         pip install toolz
         pip install dask
         pip install future
         pip install sphinx
         pip install sphinx_rtd_theme
         pip install recommonmark
         pip install matplotlib
         pip install pytest-cov
         pip install codecov
         cd lib/hypre/src
         ./configure
         make install
         cd ../../..

     - name: install
       run: pip install -e .

     - name: Run Hypre tests
       run: pytest --cov=aronnax -k 'Hypre and not 2X_2Y'
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3
       with:
        gcov: true

     - name: Run non-Hypre tests
       run: pytest --cov=aronnax -k 'not Hypre and not 2X_2Y'
     - name: Upload coverage to Codecov
       uses: codecov/codecov-action@v3
       with:
        gcov: true

 doc_html:
   runs-on: ubuntu-latest

   continue-on-error: true

   steps:
     - name: Checkout
       uses: actions/checkout@v2.2.0

     - name: Set up Python
       uses: actions/setup-python@v2

     - name: install dependencies
       run:  |
         ./.github/workflows/install_doc_dependencies.sh
         pip install -e .

     - name: build docs
       run: |
         cd docs
         sphinx-build -b html -d _build_doctrees . _build/html
 doc_latex:
   runs-on: ubuntu-latest

   continue-on-error: true

   steps:
     - name: Checkout
       uses: actions/checkout@v2.2.0

     - name: Set up Python
       uses: actions/setup-python@v2

     - name: install dependencies
       run: ./.github/workflows/install_doc_dependencies.sh

     - name: build docs
       run: |
         cd docs
         make clean latexpdf LATEXOPTS="-interaction=nonstopmode -halt-on-error"