configure.yaml

DetecterParameters:
    RuningConf:
        # set the output path
        output_dir: ./Outputs/Heatmaps/
        # set the test image folder
        data_dir_list: ./data/
    # -----[Do not change] set the network we used
    net_path: ./weights/inception_resnet_v2_test.py
    weight_path: ./weights/Res_i_v2.h5
    debug_mode: True
    # set the GPU number to use [NVIDIA TITAN Xp]
    gpu_list: [0]
    # -----[not change the following]
    gpus_per_group: 1
    pipelineA_number: 1
    batch_size: 4
    batch_size_multipler: 1
    prob_threshold: 0.5
    queue_A2B_list_LEN: 16
    queue_B2C_LEN: 6
    queue_result_LEN: 4
    block_reinitial_time: 60

ExtracterParameters:
    RuningConf:
        # set the output path
        output_dir: ./Outputs/ExtractedFeatures/
        # set the test image folder
        data_dir_list: ./data/
    net_path: ./weights/inception_resnet_v2.py
    weight_path: ./weights/Res_i_v2.h5
    debug_mode: False
    gpu_list: [0]
    # -----[not change the following]
    gpus_per_group: 1
    pipelineA_number: 1
    batch_size: 50
    batch_size_multipler: 5
    prob_threshold: 0.5
    queue_A2B_list_LEN: 16
    queue_B2C_LEN: 8
    queue_result_LEN: 4
    block_reinitial_time: 60

CommonParameters:
    # -----Do not change settings in CommonParameters-----
    thread_num: 16
    ClassInfo:
        name:  {0: normal, 1: atypia, 2: cancer}
        label: {0: 250, 1: 150, 2: 100, 3: 50}
        color: {0: [0,0,255], 1: [255,0,0], 2: [0,255,255], 3: [0,255,0]}
        frequency_band: {0: [0.0,0.24], 1: [0.26,0.49], 2: [0.51,0.74], 3: [0.76, 1]}
    ColorMean:
        r_mean: 185
        g_mean: 50
        b_mean: 185
    LevelInfo:
        spacing_of_40X: 0.2517
        spacing_of_working_level: 1.0068
        spacing_of_overview_level: 4.0272
        toleration_error: 0.2

NMSParameters:
    RuningConf:
        output_dir: ../Discriminative_patch_Coor/
#        data_dir_list: ["/home/sjwang/ssd1T/ImsightMed/stomachcancer/StomachData/"]
        data_dir_list: ["/research/pheng4/sjwang/data/stomach/zs6y/StomachData/"]