DESCRIPTION

Package: serofoi
Title: Bayesian Estimation of the Force of Infection from Serological Data
Type: Package
Version: 1.0.2
Authors@R: c(
    person("Zulma M.", "Cucunubá", , "zulma.cucunuba@javeriana.edu.co", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8165-3198")),
    person("Nicolás", "T. Domínguez", , "ex-ntorres@javeriana.edu.co", role = "aut",
           comment = c(ORCID = "0009-0002-8484-1298")),
    person("Ben", "Lambert", role = "aut"),
    person("Pierre", "Nouvellet", role = "aut"),
    person("Geraldine", "Gómez", role = "ctb",
           comment = c(ORCID = "0009-0007-8701-0568")),
    person("Jaime A.", "Pavlich-Mariscal", role = "ctb",
           comment = c(ORCID = "0000-0002-3892-6680")),
    person("Hugo", "Gruson", role = "ctb",
           comment = c(ORCID = "0000-0002-4094-1476")),
    person("David Santiago", "Quevedo", role = "ctb",
           comment = c(ORCID = "0000-0003-1583-4262")),
    person("Miguel", "Gámez", role = "ctb"),
    person("Sumali", "Bajaj", role = "ctb"),
    person("Everlyn", "Kamau", role = "ctb"),
    person("Richard", "Creswell", role = "ctb"),
    person("International Development Research Center (IDRC)", role = "fnd"),
    person("Pontificia Universidad Javeriana", role = "cph")
  )
Description: Estimating the force of infection from time varying, age varying, or constant
    serocatalytic models from population based seroprevalence studies using a bayesian framework,
    including data simulation functions enabling the generation of serological surveys based on this
    models. This tool also provides a flexible prior specification syntax for the force of infection
    and the seroreversion rate, as well as methods to assess model convergence and comparison
    criteria along with useful visualisation functions.
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/serofoi,
    https://epiverse-trace.github.io/serofoi/
BugReports: https://github.com/epiverse-trace/serofoi/issues
Depends: 
    R (>= 4.1.0)
Imports:
    bayesplot,
    checkmate,
    config,
    cowplot,
    dplyr,
    ggplot2,
    glue,
    graphics,
    loo,
    Matrix,
    methods,
    purrr,
    Rcpp (>= 0.12.0),
    rstan (>= 2.18.1),
    rstantools (>= 2.3.1),
    stats,
    tibble,
    tidyr
Suggests: 
    knitr,
    rlang,
    rmarkdown,
    scales,
    spelling,
    testthat (>= 3.0.0)
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
VignetteBuilder: 
    knitr
Additional_repositories:https://mc-stan.org/r-packages/
Biarch: true
Config/Needs/website: epiverse-trace/epiversetheme
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-GB
LazyData: true
NeedsCompilation: yes
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
SystemRequirements: GNU make