listofFiles.txt

n/home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_AllSISRS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_AllUniquelyMapped.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_CDS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_gene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_genic-other.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_intergenic.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_intron.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_lncRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_pseudogene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_smRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_UTR3.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m1/Jarvis_pi_m1_UTR5.phylip-relaxed
n/home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_AllSISRS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_AllUniquelyMapped.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_CDS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_gene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_genic-other.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_intergenic.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_intron.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_lncRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_pseudogene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_smRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_UTR3.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m2/Jarvis_pi_m2_UTR5.phylip-relaxed
n/home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_AllSISRS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_AllUniquelyMapped.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_CDS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_gene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_genic-other.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_intergenic.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_intron.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_lncRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_pseudogene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_smRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_UTR3.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m3/Jarvis_pi_m3_UTR5.phylip-relaxed
n/home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_AllSISRS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_AllUniquelyMapped.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_CDS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_gene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_genic-other.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_intergenic.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_intron.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_lncRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_pseudogene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_smRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_UTR3.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m4/Jarvis_pi_m4_UTR5.phylip-relaxed
n/home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_AllSISRS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_AllUniquelyMapped.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_CDS.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_gene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_genic-other.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_intergenic.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_intron.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_lncRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_pseudogene.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_smRNA.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_UTR3.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap/m5/Jarvis_pi_m5_UTR5.phylip-relaxed
n/home/erenada/BirdTree/Alignments/AllSites/Gap//m0: Jarvis_pi_m0_AllSISRS.phylip-relaxed Jarvis_pi_m0_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m0_CDS.phylip-relaxed Jarvis_pi_m0_gene.phylip-relaxed Jarvis_pi_m0_genic-other.phylip-relaxed Jarvis_pi_m0_intergenic.phylip-relaxed Jarvis_pi_m0_intron.phylip-relaxed Jarvis_pi_m0_lncRNA.phylip-relaxed Jarvis_pi_m0_pseudogene.phylip-relaxed Jarvis_pi_m0_smRNA.phylip-relaxed Jarvis_pi_m0_UTR3.phylip-relaxed Jarvis_pi_m0_UTR5.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap//m1: Jarvis_pi_m1_AllSISRS.phylip-relaxed Jarvis_pi_m1_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m1_CDS.phylip-relaxed Jarvis_pi_m1_gene.phylip-relaxed Jarvis_pi_m1_genic-other.phylip-relaxed Jarvis_pi_m1_intergenic.phylip-relaxed Jarvis_pi_m1_intron.phylip-relaxed Jarvis_pi_m1_lncRNA.phylip-relaxed Jarvis_pi_m1_pseudogene.phylip-relaxed Jarvis_pi_m1_smRNA.phylip-relaxed Jarvis_pi_m1_UTR3.phylip-relaxed Jarvis_pi_m1_UTR5.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap//m2: Jarvis_pi_m2_AllSISRS.phylip-relaxed Jarvis_pi_m2_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m2_CDS.phylip-relaxed Jarvis_pi_m2_gene.phylip-relaxed Jarvis_pi_m2_genic-other.phylip-relaxed Jarvis_pi_m2_intergenic.phylip-relaxed Jarvis_pi_m2_intron.phylip-relaxed Jarvis_pi_m2_lncRNA.phylip-relaxed Jarvis_pi_m2_pseudogene.phylip-relaxed Jarvis_pi_m2_smRNA.phylip-relaxed Jarvis_pi_m2_UTR3.phylip-relaxed Jarvis_pi_m2_UTR5.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap//m3: Jarvis_pi_m3_AllSISRS.phylip-relaxed Jarvis_pi_m3_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m3_CDS.phylip-relaxed Jarvis_pi_m3_gene.phylip-relaxed Jarvis_pi_m3_genic-other.phylip-relaxed Jarvis_pi_m3_intergenic.phylip-relaxed Jarvis_pi_m3_intron.phylip-relaxed Jarvis_pi_m3_lncRNA.phylip-relaxed Jarvis_pi_m3_pseudogene.phylip-relaxed Jarvis_pi_m3_smRNA.phylip-relaxed Jarvis_pi_m3_UTR3.phylip-relaxed Jarvis_pi_m3_UTR5.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap//m4: Jarvis_pi_m4_AllSISRS.phylip-relaxed Jarvis_pi_m4_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m4_CDS.phylip-relaxed Jarvis_pi_m4_gene.phylip-relaxed Jarvis_pi_m4_genic-other.phylip-relaxed Jarvis_pi_m4_intergenic.phylip-relaxed Jarvis_pi_m4_intron.phylip-relaxed Jarvis_pi_m4_lncRNA.phylip-relaxed Jarvis_pi_m4_pseudogene.phylip-relaxed Jarvis_pi_m4_smRNA.phylip-relaxed Jarvis_pi_m4_UTR3.phylip-relaxed Jarvis_pi_m4_UTR5.phylip-relaxed /home/erenada/BirdTree/Alignments/AllSites/Gap//m5: Jarvis_pi_m5_AllSISRS.phylip-relaxed Jarvis_pi_m5_AllUniquelyMapped.phylip-relaxed Jarvis_pi_m5_CDS.phylip-relaxed Jarvis_pi_m5_gene.phylip-relaxed Jarvis_pi_m5_genic-other.phylip-relaxed Jarvis_pi_m5_intergenic.phylip-relaxed Jarvis_pi_m5_intron.phylip-relaxed Jarvis_pi_m5_lncRNA.phylip-relaxed Jarvis_pi_m5_pseudogene.phylip-relaxed Jarvis_pi_m5_smRNA.phylip-relaxed Jarvis_pi_m5_UTR3.phylip-relaxed Jarvis_pi_m5_UTR5.phylip-relaxed