pyproject.toml

[tool.poetry]
name = "precalculator"
version = "0.1.0"
description = "Repository to pre-calculate model outputs for the Ersilia Model Hub"
authors = ["Kartikey Vyas <kartikeyvyas23@gmail.com>"]
license = "MIT"
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.10"
urllib3 = "^1"
pandas = "^2"
boto3 = "^1.28.26"
pydantic = "^2"
s3fs = "^2023.10.0"
python-dotenv = "^1.0.0"
awswrangler = "^3.9.0"
numpy = "^1.26.4"
pyairtable = "^2.3.3"
ersilia = {path = "ersilia", develop = true}
pydantic-settings = "^2.4.0"

[tool.poetry.group.dev.dependencies]
pytest = "^7.4.0"
black = "^23.7.0"
ruff = "^0.0.278"
localstack = "^2.1.0"
ipykernel = "^6.25.1"
jupyter = "^1.0.0"
pre-commit = "^3.3.3"
mypy = "^1.5.1"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.mypy]
ignore_missing_imports = true

[tool.black]
line-length = 120

[tool.ruff]
line-length = 120

# rules to enable/ignore
select = [
    # pyflakes
    "F",
    # pycodestyle
    "E",
    "W",
    # type annotations
    "ANN",
    # pep8-naming
    "N",
    # bugbear
    "B",
    # isort
    "I",
    # flake8-unused-arguments
    "ARG",
    # flake8-self
    "SLF",
    # ruff-specific
    "RUF",
]
ignore = [
    # allow untyped self and cls args, and no return type from dunder methods
    "ANN101",
    "ANN102",
    "ANN204",
    # allow == True because pandas dataframes overload equality
    "E712",
]
# first-party imports for sorting
src = ["."]
fix = true
show-fixes = true

[tool.ruff.per-file-ignores]
# imports in __init__.py don't need to be used in __init__.py
"__init__.py" = ["F401"]
# test functions don't need return types
"tests/*" = ["ANN201", "ANN202"]

[tool.ruff.flake8-annotations]
# allow *args: Any, **kwargs: Any
allow-star-arg-any = true