cluster.json

{
    "__default__" :
    {
        "t" : "0-00:05:00",
        "c" : 1,
        "p" : "short",
        "mem" : "4G"
    },
    "fastp":
     {
        "t" : "0-00:10:00",
        "c" : 1,
        "p" : "short",
        "mem" : "6G"
    },
    "minimap2":
    {
        "mem" : "10G",
        "t" : "0-00:20:00",
        "p" : "short",
        "c" : 1
    },
    "samtools_sort":
    {
        "mem" : "15G",
        "t" : "0-00:13:00",
        "p" : "short",
        "c" : 1
    },
    "samtools_rmdup":
    {
        "mem" : "8G",
        "t" : "0-00:10:00",
        "p" : "short",
        "c" : 1
    },
    "depthcheck":
    {
        "mem" : "1G",
        "t" : "0-00:02:00",
        "p" : "short",
        "c" : 1
    },
     "samtools_index":
    {
        "mem" : "4G",
        "t" : "0-00:05:00",
        "p" : "short",
        "c" : 1
    },
    "pilon":
    {
        "mem" : "15G",
        "t" : "0-00:20:00",
        "p" : "short",
        "c" : 1
    },
    "cut_vcf":
    {
        "mem" : "2G",
        "t" : "0-00:03:00",
        "p" : "short",
        "c" : 1
    },
     "call_lineage":
    {
        "mem" : "1G",
        "t" : "0-00:02:00",
        "p" : "short",
        "c" : 1
    },
    "annotator":
    {
        "mem" : "6G",
        "t" : "0-00:10:00",
        "p" : "short",
        "c" : 1
    },
    "generate_matrix":
    {
        "mem" : "2G",
        "t" : "0-00:03:00",
        "p" : "short",
        "c" : 1
    },
   "TBpredict":
    {
        "mem" : "1G",
        "t" : "0-00:03:00",
        "p" : "short",
        "c" : 1
    },
    "enhance":
    {
        "mem" : "1G",
        "t" : "0-00:03:00",
        "p" : "short",
        "c" : 1
    }
}