diff --git a/.github/workflows/test_pip_tcl_ubuntu_newenv.yml b/.github/workflows/test_pip_tcl_ubuntu_newenv.yml index 3226bb9..879cd34 100644 --- a/.github/workflows/test_pip_tcl_ubuntu_newenv.yml +++ b/.github/workflows/test_pip_tcl_ubuntu_newenv.yml @@ -109,7 +109,7 @@ jobs: - name: Install dependencies run: | sudo apt-get update - sudo apt-get install libnetcdf-dev + sudo apt-get install libnetcdf-dev libsqlite3-dev python -m pip install -U --upgrade-strategy eager pip pip install -U --upgrade-strategy eager setuptools "numpy==1.23.5" wheel pip install -r pip_requirements.txt diff --git a/src/AlloViz/AlloViz/Analysis.py b/src/AlloViz/AlloViz/Analysis.py index 133cc4c..213f299 100644 --- a/src/AlloViz/AlloViz/Analysis.py +++ b/src/AlloViz/AlloViz/Analysis.py @@ -31,7 +31,7 @@ }, "cfb": { "function": "networkx.algorithms.centrality.current_flow_betweenness_centrality", - "arguments": {"weight": "graph_weight"} + "arguments": {"weight": "graph_distance"} # "graph_weight" } } """ @@ -47,7 +47,7 @@ }, "cfb": { "function": "networkx.algorithms.centrality.edge_current_flow_betweenness_centrality", - "arguments": {"weight": "graph_weight"} + "arguments": {"weight": "graph_distance"} # "graph_weight" } } """ @@ -209,7 +209,7 @@ def analyze(filtered, elements, metrics, nodes_dict, edges_dict): Other Parameters ---------------- nodes_dict, edges_dict : dict - Optional kwarg(s) of the dictionary(ies) thatmaps network metrics custom names + Optional kwarg(s) of the dictionary(ies) that maps network metrics custom names (e.g., betweenness centrality, "btw") with their corresponding NetworkX function and arguments, with the format: ```