diff --git a/schema/cat-vrs/def/CategoricalVariant.rst b/schema/cat-vrs/def/CategoricalVariant.rst index 3952e0e..af9e673 100644 --- a/schema/cat-vrs/def/CategoricalVariant.rst +++ b/schema/cat-vrs/def/CategoricalVariant.rst @@ -22,22 +22,22 @@ Some CategoricalVariant attributes are inherited from :ref:`gks-core:Entity`. - Limits - Description * - id - - + - - string - 0..1 - The 'logical' identifier of the Entity in the system of record, e.g. a UUID. This 'id' is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another. * - name - - + - - string - 0..1 - A primary name for the entity. * - description - - + - - string - 0..1 - A free-text description of the Entity. * - aliases - - + - .. raw:: html ⋮ @@ -45,7 +45,7 @@ Some CategoricalVariant attributes are inherited from :ref:`gks-core:Entity`. - 0..m - Alternative name(s) for the Entity. * - extensions - - + - .. raw:: html ⋮ @@ -53,12 +53,12 @@ Some CategoricalVariant attributes are inherited from :ref:`gks-core:Entity`. - 0..m - A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model. * - type - - + - - string - 1..1 - MUST be "CategoricalVariant" * - members - - + - .. raw:: html ⋮ @@ -66,15 +66,15 @@ Some CategoricalVariant attributes are inherited from :ref:`gks-core:Entity`. - 0..m - A non-exhaustive list of VRS Variations that satisfy the constraints of this categorical variant. * - constraints - - + - .. raw:: html ⋮ - :ref:`Constraint` - 0..m - - + - * - mappings - - + - .. raw:: html ⋮ diff --git a/schema/cat-vrs/def/Constraint.rst b/schema/cat-vrs/def/Constraint.rst index f1005e4..9399524 100644 --- a/schema/cat-vrs/def/Constraint.rst +++ b/schema/cat-vrs/def/Constraint.rst @@ -21,7 +21,7 @@ Constraints are used to construct an intensional semantics of categorical varian - Limits - Description * - type - - + - - string - 1..1 - - + - diff --git a/schema/cat-vrs/def/CopyChangeConstraint.rst b/schema/cat-vrs/def/CopyChangeConstraint.rst index f1da629..a349b9f 100644 --- a/schema/cat-vrs/def/CopyChangeConstraint.rst +++ b/schema/cat-vrs/def/CopyChangeConstraint.rst @@ -22,12 +22,12 @@ Some CopyChangeConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "CopyChangeConstraint" * - copyChange - - + - - string - 1..1 - The relative assessment of the change in copies that members of this categorical variant satisfies. diff --git a/schema/cat-vrs/def/CopyCountConstraint.rst b/schema/cat-vrs/def/CopyCountConstraint.rst index 5f0bd8c..418a109 100644 --- a/schema/cat-vrs/def/CopyCountConstraint.rst +++ b/schema/cat-vrs/def/CopyCountConstraint.rst @@ -22,12 +22,12 @@ Some CopyCountConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "CopyCountConstraint" * - copies - - + - - integer | :ref:`Range` - 1..1 - The precise value or range of copies members of this categorical variant must satisfy. diff --git a/schema/cat-vrs/def/DefiningAlleleConstraint.rst b/schema/cat-vrs/def/DefiningAlleleConstraint.rst index 6feddfc..d2908e9 100644 --- a/schema/cat-vrs/def/DefiningAlleleConstraint.rst +++ b/schema/cat-vrs/def/DefiningAlleleConstraint.rst @@ -22,17 +22,17 @@ Some DefiningAlleleConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "DefiningAlleleConstraint" * - allele - - + - - :ref:`Allele` | :ref:`iriReference` - 1..1 - - + - * - relations - - + - .. raw:: html ⋮ diff --git a/schema/cat-vrs/def/DefiningLocationConstraint.rst b/schema/cat-vrs/def/DefiningLocationConstraint.rst index 8121881..a09e614 100644 --- a/schema/cat-vrs/def/DefiningLocationConstraint.rst +++ b/schema/cat-vrs/def/DefiningLocationConstraint.rst @@ -22,17 +22,17 @@ Some DefiningLocationConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "DefiningLocationConstraint" * - location - - + - - :ref:`SequenceLocation` | :ref:`iriReference` - 1..1 - - + - * - relations - - + - .. raw:: html ⋮ @@ -40,7 +40,7 @@ Some DefiningLocationConstraint attributes are inherited from :ref:`Constraint`. - 0..m - Defined relationships from which members relate to the defining location. * - matchCharacteristic - - + - - :ref:`MappableConcept` - 1..1 - A characteristic of the location that is used to match the defining location to member locations. diff --git a/schema/cat-vrs/def/FeatureContextConstraint.rst b/schema/cat-vrs/def/FeatureContextConstraint.rst index 8b34038..fd7deb0 100644 --- a/schema/cat-vrs/def/FeatureContextConstraint.rst +++ b/schema/cat-vrs/def/FeatureContextConstraint.rst @@ -22,12 +22,12 @@ Some FeatureContextConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "FeatureContextConstraint" * - featureContext - - + - - :ref:`MappableConcept` - 1..1 - A feature identifier. diff --git a/schema/cat-vrs/def/FunctionConstraint.rst b/schema/cat-vrs/def/FunctionConstraint.rst index d20c51f..ae61b5e 100644 --- a/schema/cat-vrs/def/FunctionConstraint.rst +++ b/schema/cat-vrs/def/FunctionConstraint.rst @@ -22,18 +22,18 @@ Some FunctionConstraint attributes are inherited from :ref:`Constraint`. - Limits - Description * - type - - + - - string - 1..1 - MUST be "FunctionConstraint" * - functionConsequence - - + - - string - 1..1 - A categorical label of the function change that members of this categorical variant satisfies, using ontology terms from `The Sequence Ontology `_. MUST be `"SO:0002052" `_, `"SO:0002054" `_, `"SO:0001561" `_, `"SO:0002219" `_, `"SO:0001557" `_, or `"SO:0002053" `_. * - description - - + - - string - 0..1 - A free-text description of the function change. diff --git a/schema/cat-vrs/json/CanonicalAllele b/schema/cat-vrs/json/CanonicalAllele index c2d0ad3..a13aa0d 100644 --- a/schema/cat-vrs/json/CanonicalAllele +++ b/schema/cat-vrs/json/CanonicalAllele @@ -55,4 +55,4 @@ } } ] -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/CategoricalCnv b/schema/cat-vrs/json/CategoricalCnv index 374813d..2c432c6 100644 --- a/schema/cat-vrs/json/CategoricalCnv +++ b/schema/cat-vrs/json/CategoricalCnv @@ -55,4 +55,4 @@ } } ] -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/CategoricalVariant b/schema/cat-vrs/json/CategoricalVariant index 2206054..a6d4be5 100644 --- a/schema/cat-vrs/json/CategoricalVariant +++ b/schema/cat-vrs/json/CategoricalVariant @@ -97,4 +97,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/Constraint b/schema/cat-vrs/json/Constraint index 359c184..204a017 100644 --- a/schema/cat-vrs/json/Constraint +++ b/schema/cat-vrs/json/Constraint @@ -25,4 +25,4 @@ "$ref": "/ga4gh/schema/cat-vrs/1.x/json/FunctionConstraint" } ] -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/CopyChangeConstraint b/schema/cat-vrs/json/CopyChangeConstraint index 4d50814..b2904de 100644 --- a/schema/cat-vrs/json/CopyChangeConstraint +++ b/schema/cat-vrs/json/CopyChangeConstraint @@ -32,4 +32,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/CopyCountConstraint b/schema/cat-vrs/json/CopyCountConstraint index 5e9136c..2a57771 100644 --- a/schema/cat-vrs/json/CopyCountConstraint +++ b/schema/cat-vrs/json/CopyCountConstraint @@ -29,4 +29,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/DefiningAlleleConstraint b/schema/cat-vrs/json/DefiningAlleleConstraint index 75ac877..debd337 100644 --- a/schema/cat-vrs/json/DefiningAlleleConstraint +++ b/schema/cat-vrs/json/DefiningAlleleConstraint @@ -36,4 +36,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/DefiningLocationConstraint b/schema/cat-vrs/json/DefiningLocationConstraint index 1263d17..3f989e1 100644 --- a/schema/cat-vrs/json/DefiningLocationConstraint +++ b/schema/cat-vrs/json/DefiningLocationConstraint @@ -41,4 +41,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/FeatureContextConstraint b/schema/cat-vrs/json/FeatureContextConstraint index d2cbbc9..dd2ae9e 100644 --- a/schema/cat-vrs/json/FeatureContextConstraint +++ b/schema/cat-vrs/json/FeatureContextConstraint @@ -22,4 +22,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/FunctionConstraint b/schema/cat-vrs/json/FunctionConstraint index 7fd3aa0..8a523e4 100644 --- a/schema/cat-vrs/json/FunctionConstraint +++ b/schema/cat-vrs/json/FunctionConstraint @@ -34,4 +34,4 @@ "type" ], "additionalProperties": false -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/FunctionVariant b/schema/cat-vrs/json/FunctionVariant index 592f3df..60b319b 100644 --- a/schema/cat-vrs/json/FunctionVariant +++ b/schema/cat-vrs/json/FunctionVariant @@ -32,4 +32,4 @@ ] } ] -} \ No newline at end of file +} diff --git a/schema/cat-vrs/json/ProteinSequenceConsequence b/schema/cat-vrs/json/ProteinSequenceConsequence index 9c1bc70..bf3d0de 100644 --- a/schema/cat-vrs/json/ProteinSequenceConsequence +++ b/schema/cat-vrs/json/ProteinSequenceConsequence @@ -43,4 +43,4 @@ } } ] -} \ No newline at end of file +}