diff --git a/tests/test_hybracter.py b/tests/test_hybracter.py index c9d5e8c..c95ac9c 100644 --- a/tests/test_hybracter.py +++ b/tests/test_hybracter.py @@ -341,7 +341,7 @@ def test_hybracter_long(run_mac): # test override # bit useless for mac (as --bacteria won't work) but won't break anything so just leave -def test_hybracter_long(run_mac): +def test_hybracter_long_medaka_override(run_mac): """test hybracter long""" outdir: Path = "test_hybracter_output_medaka_override" input_csv: Path = test_data_path / "test_long_input.csv" @@ -351,6 +351,19 @@ def test_hybracter_long(run_mac): exec_command(cmd) remove_directory(outdir) +# test --extra_params_flye + +def test_hybracter_long_medaka_override(run_mac): + """test hybracter long""" + outdir: Path = "test_hybracter_output_medaka_override" + input_csv: Path = test_data_path / "test_long_input.csv" + cmd = f"hybracter long --input {input_csv} --threads {threads} --output {outdir} --databases {db_dir} --extra_params_flye \"--meta\" " + if run_mac: + cmd += " --mac" + exec_command(cmd) + remove_directory(outdir) + + def test_hybracter_long_auto(run_mac): """