requirements.txt

accelerate==0.29.3
anndata==0.10.7
appdirs==1.4.4
array-api-compat==1.6
certifi==2024.2.2
charset-normalizer==3.3.2
click==8.1.7
contourpy==1.2.1
cycler==0.12.1
docker-pycreds==0.4.0
einops==0.4.1
exceptiongroup==1.2.1
filelock==3.13.4
fonttools==4.51.0
fsspec==2024.3.1
get-annotations==0.1.2
gitdb==4.0.11
GitPython==3.1.43
h5py==3.11.0
huggingface-hub==0.22.2
idna==3.7
imageio==2.34.0
importlib-resources==6.4.0
Jinja2==3.1.3
joblib==1.4.0
kiwisolver==1.4.5
lazy-loader==0.4
legacy-api-wrap==1.4
llvmlite==0.42.0
lmdb==1.4.1
MarkupSafe==2.1.5
matplotlib==3.8.4
mpmath==1.3.0
natsort==8.4.0
networkx==3.2.1
numba==0.59.1
numpy==1.26.4
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.19.3
nvidia-nvjitlink-cu12==12.4.127
nvidia-nvtx-cu12==12.1.105
opencv-python==4.9.0.80
openslide-python==1.3.1
packaging==24.0
pandas==2.2.2
patsy==0.5.6
pillow==10.3.0
POT==0.9.3
protobuf==4.25.3
psutil==5.9.8
py-lz4framed==0.14.0
pynndescent==0.5.12
pyparsing==3.1.2
python-dateutil==2.9.0.post0
pytz==2024.1
PyYAML==6.0.1
requests==2.31.0
safetensors==0.4.3
scanpy==1.10.1
scikit-image==0.22.0
scikit-learn==1.4.2
scipy==1.13.0
seaborn==0.13.2
sentry-sdk==1.45.0
session-info==1.0.0
setproctitle==1.3.3
six==1.16.0
smmap==5.0.1
statsmodels==0.14.2
stdlib-list==0.10.0
sympy==1.12
threadpoolctl==3.4.0
tifffile==2024.4.18
torch==2.2.2
torchvision==0.17.2
tqdm==4.66.2
triton==2.2.0
typing-extensions==4.11.0
tzdata==2024.1
umap-learn==0.5.6
urllib3==2.2.1
wandb==0.16.6
zipp==3.18.1