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v0.1.0 (04-27-2020)
- Pure quorum checks have been made faster now by two changes: Before a matrix
is iterated over to check fulfillment of quorum
$m$ , the maximum color id$c$ being present in that matrix is queried. If already$c <= m$ , the check is aborted. Additionally, missing colors are now counted next to present ones as well which allows to terminate checks also if too many colors have been missed already.
- Pure quorum checks have been made faster now by two changes: Before a matrix
is iterated over to check fulfillment of quorum
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v0.2.0 (04-07-2021)
- Usage of arbitrary scores is now enabled.
- Hits with invalid offsets are now moved to successive unitigs and kept even though they do not have a right extension path.
- The unitig on which a left, gapped extension ends is now saved for each hit to improve the result filtration after gapped extension.
- An input parameter check has been added to ensure that a given minial seed length is always positive.
- Seeds that could not be extended without gaps are no longer discarded if they are longer than the minimal seed length.
- Quorum precalculation is now possible during index building. Information is saved as part of the index
- Introduced a new index format to enable storage of quorum information.
- Enabled multi-threaded graph loading
- Closed some smaller memory leaks.
- Disabled verbose mode for graph reading and removed some logging info.
- Some refactoring.