diff --git a/1000g/1000g_plugin.py b/1000g/1000g_plugin.py index 100f213..ed28056 100644 --- a/1000g/1000g_plugin.py +++ b/1000g/1000g_plugin.py @@ -1,5 +1,3 @@ -import pysam - from plugin_system.plugins.base_plugin import BasePlugin from plugin_system.utils import ( load_dict, diff --git a/requirements.txt b/requirements.txt index abf495e..2880109 100644 --- a/requirements.txt +++ b/requirements.txt @@ -14,8 +14,6 @@ setuptools # for cohort allele frequency generation firecloud +ga4gh.va_spec~=0.2.0a0 pandas vrsix==0.1.1 - -# TODO: use actual version with merge of PR -ga4gh.va_spec @ git+https://github.com/ga4gh/va-spec-python.git@2ea827ee9179262094e9f4cdba0876a6a389a54c#egg=ga4gh.va_spec diff --git a/setup.py b/setup.py index 4741c5f..510c932 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ # Versions should comply with PEP 440: # https://packaging.python.org/en/latest/single_source_version.html - version='0.2.0rc5', # Required + version='0.3.0', # Required # This is a one-line description or tagline of what your project does. This # corresponds to the "Summary" metadata field: