From 92835d94a62315116e9ac6e94476ebe15e28a82a Mon Sep 17 00:00:00 2001 From: James Stevenson Date: Tue, 26 Nov 2024 16:20:18 -0500 Subject: [PATCH] minor usage notes --- README.md | 2 +- src/vrsix/cli.py | 2 +- src/vrsix/sqlite.py | 4 +--- 3 files changed, 3 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index ea5a8d3..7fd948f 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ All instances of variations are stored with an associated file URI to support la % vrsix load chr1.vcf gs://my_stuff/chr1.vcf ``` -By default, all records are ingested into a sqlite file located at `~/.local/share/vrsix.db`. This can be overridden with either the environment variable `VRS_VCF_INDEX`, or with an optional flag: +By default, all records are ingested into a sqlite file located at `~/.local/share/vrsix.db`. This can be overridden with either the environment variable `VRS_VCF_INDEX`, or with an optional flag to the CLI: ```shell vrsix load --db-location=./vrsix.db input.vcf diff --git a/src/vrsix/cli.py b/src/vrsix/cli.py index 79817d7..c554729 100644 --- a/src/vrsix/cli.py +++ b/src/vrsix/cli.py @@ -1,4 +1,4 @@ -"""Provide CLI utility for interfacing with data load and fetch operations.""" +"""Provide CLI utility for interfacing with data loading operations.""" import logging from pathlib import Path diff --git a/src/vrsix/sqlite.py b/src/vrsix/sqlite.py index a310cdc..78f5683 100644 --- a/src/vrsix/sqlite.py +++ b/src/vrsix/sqlite.py @@ -4,7 +4,5 @@ from pathlib import Path DEFAULT_SQLITE_LOCATION = Path( - os.environ.get( - "VRS_VCF_INDEX", Path.home() / ".local" / "share" / "vrs_vcf_index.db" - ) + os.environ.get("VRS_VCF_INDEX", Path.home() / ".local" / "share" / "vrsix.db") )