From dc6afab1b0afc3417fbb84bc575df674d8cfda6c Mon Sep 17 00:00:00 2001 From: James Stevenson Date: Tue, 26 Nov 2024 15:27:15 -0500 Subject: [PATCH] chore: remove vestiges of fetch --- README.md | 17 ----------------- src/vrsix/cli.py | 2 +- 2 files changed, 1 insertion(+), 18 deletions(-) diff --git a/README.md b/README.md index f0054e3..7f959b3 100644 --- a/README.md +++ b/README.md @@ -8,23 +8,6 @@ From a VCF, ingest a VRS ID and the corresponding VCF-called location (i.e. suff % vrsix load chr1.vcf ``` -Given a VRS ID, retrieve VCF-associated data (output format TBD) - -```shell -% vrsix fetch-by-id --db-location=sqlite.db dwwiZdvVtfAmomu0OBsiHue1O-bw5SpG -ga4gh:VA.dwwiZdvVtfAmomu0OBsiHue1O-bw5SpG,1,783006 -``` - -Or fetch all rows within a coordinate range: - -```shell -% vrsix fetch-by-range --db-location=sqlite.db 1 783000 783200 -ga4gh:VA.dwwiZdvVtfAmomu0OBsiHue1O-bw5SpG,1,783006 -ga4gh:VA.MiasxyXMXtOpsZgGelL3c4QgtflCNLHD,1,783006 -ga4gh:VA.5cY2k53xdW7WeHw2WG1HA7jl50iH-r9p,1,783175 -ga4gh:VA.jHaXepIvlbnapfPtH_62y-Qm81hCrBYn,1,783175 -``` - ## Set up for development Ensure that a recent version of the [Rust toolchain](https://www.rust-lang.org/tools/install) is available. diff --git a/src/vrsix/cli.py b/src/vrsix/cli.py index 923b668..848c72f 100644 --- a/src/vrsix/cli.py +++ b/src/vrsix/cli.py @@ -1,4 +1,4 @@ -"""Provide CLI utility for interfacing with data load and fetch operations.""" +"""Provide CLI utility for interfacing with data loading.""" import logging from pathlib import Path