From 86064336f544eca9872f57f9ab176409aefb1075 Mon Sep 17 00:00:00 2001 From: Natalie Elphick Date: Thu, 18 Jan 2024 16:53:39 -0800 Subject: [PATCH] finalize slides for :snowflake: 2024 and update lockfile --- docs/Intro_to_R_data_analysis_part_1.html | 14 +++- docs/Intro_to_R_data_analysis_part_2.html | 12 +++- .../Intro_to_R_data_analysis_part_1.Rmd | 9 ++- .../Intro_to_R_data_analysis_part_2.Rmd | 9 ++- intro-r-data-analysis/renv.lock | 69 ++++++++++++++----- 5 files changed, 90 insertions(+), 23 deletions(-) diff --git a/docs/Intro_to_R_data_analysis_part_1.html b/docs/Intro_to_R_data_analysis_part_1.html index 5489334..3a93540 100644 --- a/docs/Intro_to_R_data_analysis_part_1.html +++ b/docs/Intro_to_R_data_analysis_part_1.html @@ -2574,8 +2574,9 @@

Introductions

Natalie Elphick
-Bioinformatician I
-Bioinformatics Core

+Bioinformatician I

+

Michela Traglia (TA)
+Senior Statistician

Poll 1

@@ -2590,6 +2591,13 @@

Poll 1

  • None of the above
    • +
    +

    Target Audience

    + +

    Part 1:

      @@ -2819,7 +2827,7 @@

      Exercise 2: Data Types and Structures

      10 min break

      -
      +
      10:00
      diff --git a/docs/Intro_to_R_data_analysis_part_2.html b/docs/Intro_to_R_data_analysis_part_2.html index 45adb18..799a650 100644 --- a/docs/Intro_to_R_data_analysis_part_2.html +++ b/docs/Intro_to_R_data_analysis_part_2.html @@ -2795,6 +2795,14 @@

      Press the ? key for tips on navigating these slides
      +
      +

      Introductions

      +

      Natalie Elphick
      +Bioinformatician I

      +

      Yihang Xin (TA)
      +Software Engineer III

      +
      +

      Schedule

        @@ -3635,7 +3643,7 @@

        Arrange Rows

        Summarising data

          -
        • The dplyr summarize()function computes a table of +
        • The dplyr summarise() function computes a table of summaries for a data frame
        • group_by() groups the input data frame by the specified variable(s)
          • @@ -3854,7 +3862,7 @@

          Adding and Modifying Layers

          10 min break

          -
          +
          10:00
          diff --git a/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd b/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd index b348b7e..7b994e6 100644 --- a/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd +++ b/intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd @@ -26,7 +26,10 @@ library(tidyverse) **Natalie Elphick** Bioinformatician I -*Bioinformatics Core* + +**Michela Traglia (TA)** +Senior Statistician + ## Poll 1 @@ -38,6 +41,10 @@ Bioinformatician I 4. All of the above 5. None of the above +## Target Audience +- No background in statistics or computing +- No prior experience with programming or R/RStudio + ## Part 1: 1. What is R and why should you use it? diff --git a/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd b/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd index 0d3ba15..2e1218e 100644 --- a/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd +++ b/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd @@ -25,6 +25,13 @@ theme_set(theme_grey(base_size = 16))
          *Press the ? key for tips on navigating these slides*
          +# Introductions +**Natalie Elphick** +Bioinformatician I + +**Yihang Xin (TA)** +Software Engineer III + # Schedule 1. Introduction to Tidyverse @@ -121,7 +128,7 @@ arrange(.data = mpg, scroll_box(width = "100%") ``` ## Summarising data -- The dplyr **summarize()**function computes a table of +- The dplyr **summarise()** function computes a table of summaries for a data frame - **group_by()** groups the input data frame by the specified variable(s) diff --git a/intro-r-data-analysis/renv.lock b/intro-r-data-analysis/renv.lock index 9101bb7..52c9d40 100644 --- a/intro-r-data-analysis/renv.lock +++ b/intro-r-data-analysis/renv.lock @@ -804,6 +804,34 @@ ], "Hash": "266a20443ca13c65688b2116d5220f76" }, + "kableExtra": { + "Package": "kableExtra", + "Version": "1.3.4", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "digest", + "glue", + "grDevices", + "graphics", + "htmltools", + "knitr", + "magrittr", + "rmarkdown", + "rstudioapi", + "rvest", + "scales", + "stats", + "stringr", + "svglite", + "tools", + "viridisLite", + "webshot", + "xml2" + ], + "Hash": "49b625e6aabe4c5f091f5850aba8ff78" + }, "knitr": { "Package": "knitr", "Version": "1.45", @@ -1492,6 +1520,18 @@ ], "Hash": "671a4d384ae9d32fc47a14e98bfa3dc8" }, + "svglite": { + "Package": "svglite", + "Version": "2.1.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "cpp11", + "systemfonts" + ], + "Hash": "124a41fdfa23e8691cb744c762f10516" + }, "sys": { "Package": "sys", "Version": "3.4.2", @@ -1722,6 +1762,19 @@ ], "Hash": "390f9315bc0025be03012054103d227c" }, + "webshot": { + "Package": "webshot", + "Version": "0.5.5", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "callr", + "jsonlite", + "magrittr" + ], + "Hash": "16858ee1aba97f902d24049d4a44ef16" + }, "whisker": { "Package": "whisker", "Version": "0.4.1", @@ -1742,22 +1795,6 @@ ], "Hash": "4b25e70111b7d644322e9513f403a272" }, - "xaringanthemer": { - "Package": "xaringanthemer", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "colorspace", - "glue", - "methods", - "purrr", - "utils", - "whisker" - ], - "Hash": "65ea1016710fa4058b9d5d330f3f24f6" - }, "xfun": { "Package": "xfun", "Version": "0.41",