diff --git a/tests/test_integrate.py b/tests/test_integrate.py index 2372d51..eccf51a 100644 --- a/tests/test_integrate.py +++ b/tests/test_integrate.py @@ -8,21 +8,19 @@ def test_integrate(datafolder): - with tempfile.TemporaryDirectory() as tmpoutdir, \ - tempfile.TemporaryDirectory() as tmpdirA, \ - tempfile.TemporaryDirectory() as tmpdirB: + with tempfile.TemporaryDirectory() as tmpoutdir: # run panaroo on pairs of gff3 files sys.argv = ["", "-i", datafolder + "aa1.gff", datafolder + "aa2.gff", "--no_clean_edges", "--clean-mode", "sensitive", - "-o", tmpdirA] + "-o", tmpoutdir] main() # merge the result sys.argv = ["", - "-d", tmpdirA, + "-d", tmpoutdir, "-i", datafolder + "aa3.gff", "-o", tmpoutdir] try: