From 30393cfd91507511b1ad59e50f9fb8a6157a192d Mon Sep 17 00:00:00 2001
From: Gerry Tonkin-Hill <g.tonkinhill@gmail.com>
Date: Fri, 22 Dec 2023 05:15:36 +0100
Subject: [PATCH] update integrate test

---
 tests/test_integrate.py | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/tests/test_integrate.py b/tests/test_integrate.py
index 2372d51..eccf51a 100644
--- a/tests/test_integrate.py
+++ b/tests/test_integrate.py
@@ -8,21 +8,19 @@
 
 def test_integrate(datafolder):
 
-    with tempfile.TemporaryDirectory() as tmpoutdir, \
-        tempfile.TemporaryDirectory() as tmpdirA, \
-        tempfile.TemporaryDirectory() as tmpdirB:
+    with tempfile.TemporaryDirectory() as tmpoutdir:
         # run panaroo on pairs of gff3 files
         sys.argv = ["", "-i",
             datafolder + "aa1.gff",
             datafolder + "aa2.gff",
             "--no_clean_edges",
             "--clean-mode", "sensitive",
-            "-o", tmpdirA]
+            "-o", tmpoutdir]
         main()
 
         # merge the result
         sys.argv = ["", 
-            "-d", tmpdirA,
+            "-d", tmpoutdir,
             "-i", datafolder + "aa3.gff",
             "-o", tmpoutdir]
         try: