findPC is a software tool including six methods to automatically select the number of principal components to retain based on the standard deviations explained by each PC. A major advantage of findPC is that the only information required is a numeric vector of standard deviations explained by each PC.
findPC software can be installed via Github. Users should have R installed on their computer before installing findPC. R can be downloaded here: http://www.r-project.org/. To install the latest version of findPC package via Github, run following commands in R:
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("haotian-zhuang/findPC")
Check the following page for the user manual: http://htmlpreview.github.io/?https://github.com/haotian-zhuang/findPC/blob/main/vignettes/UserManual.html
Please cite the following paper: Zhuang et al., findPC: An R package to automatically select the number of principal components in single-cell analysis, Bioinformatics, Volume 38, Issue 10, 15 May 2022, Pages 2949–2951, https://doi.org/10.1093/bioinformatics/btac235
Author: Haotian Zhuang, Zhicheng Ji
Report bugs and provide suggestions by sending email to:
Maintainer: Haotian Zhuang (haotian.zhuang@duke.edu)
Or open a new issue on this Github page