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[Version: >= 3.0.2 Non-Cleavable Search] Maximum peptide length > 50 slows down search for big databases #25

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michabirklbauer opened this issue Jun 22, 2024 · 0 comments
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info Information that might be important wontfix This will not be worked on workaround A potential workaround for the problem is available

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@michabirklbauer
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  • Due to the limitations of our matrix search it is recommended to set a maximum peptide length of less than 50
  • For small databases this doesn't matter
  • For big databases this matters a lot, peptides longer than 50 amino acids trigger re-allocations of the sparse matrix which are very costly and a search that would take 30s suddenly takes 20min
  • Going with the default maximum peptide length in MS Annika is usually a good choice!
@michabirklbauer michabirklbauer self-assigned this Jun 22, 2024
@michabirklbauer michabirklbauer added info Information that might be important wontfix This will not be worked on workaround A potential workaround for the problem is available labels Jun 22, 2024
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info Information that might be important wontfix This will not be worked on workaround A potential workaround for the problem is available
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