From 0a95b61e0f5aba084a1355c9cf2f5c85c35a240a Mon Sep 17 00:00:00 2001
From: Micha Birklbauer <micha.birklbauer@gmail.com>
Date: Thu, 11 Jan 2024 13:25:22 +0100
Subject: [PATCH] add more tests

---
 tests/tests.py | 45 +++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

diff --git a/tests/tests.py b/tests/tests.py
index 94ebc93..099655f 100644
--- a/tests/tests.py
+++ b/tests/tests.py
@@ -29,3 +29,48 @@ def test2_msannika_fdr():
 
     # check fdr
     assert result[0][result[0]["Decoy"] == True].shape[0] / result[0][result[0]["Decoy"] == False].shape[0] < 0.01
+
+# crosslink file with fdr should validate
+def test3_msannika_fdr():
+
+    from msannika_fdr import main
+
+    result = main(["DSSO_Crosslinks.xlsx", "-fdr", "1"])
+
+    # check nr of results
+    assert len(result) == 1
+
+    # check nr of crosslinks
+    assert result[0].shape[0] == 714
+
+    # check fdr
+    assert result[0][result[0]["Decoy"] == True].shape[0] / result[0][result[0]["Decoy"] == False].shape[0] < 0.01
+
+# crosslink file with fdr should validate
+def test4_msannika_fdr():
+
+    from msannika_fdr import main
+
+    result = main(["DSSO_Crosslinks.xlsx", "-fdr", "0.05"])
+
+    # check nr of results
+    assert len(result) == 1
+
+    # check nr of crosslinks
+    assert result[0].shape[0] == 807
+
+    # check fdr
+    assert result[0][result[0]["Decoy"] == True].shape[0] / result[0][result[0]["Decoy"] == False].shape[0] < 0.05
+
+# csms file without fdr should group
+def test5_msannika_fdr():
+
+    from msannika_fdr import main
+
+    result = main(["DSSO_CSMs.xlsx"])
+
+    # check nr of results
+    assert len(result) == 1
+
+    # check nr of grouped crosslinks
+    assert result[0].shape[0] == 3192