From 3a9e67736040e8f9efb40cae0d81263616bcc76c Mon Sep 17 00:00:00 2001
From: Micha Birklbauer <micha.birklbauer@gmail.com>
Date: Wed, 10 Jan 2024 17:14:44 +0100
Subject: [PATCH] add gh-actions

---
 .github/workflows/python-app.yml | 45 ++++++++++++++++++++++++++++++++
 tests/tests.py                   | 15 +++++++++++
 2 files changed, 60 insertions(+)
 create mode 100644 .github/workflows/python-app.yml
 create mode 100644 tests/tests.py

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
new file mode 100644
index 0000000..bef7085
--- /dev/null
+++ b/.github/workflows/python-app.yml
@@ -0,0 +1,45 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# Reference workflow provided by (c) GitHub
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: msannika_fdr
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Copy scripts and data to "/tests"
+      run: |
+        cp msannika_fdr.py tests
+        cp data/DSSO_Crosslinks.xlsx .
+        cp data/DSSO_CSMs.xlsx .
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install flake8 pytest
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        pytest tests/tests.py
diff --git a/tests/tests.py b/tests/tests.py
new file mode 100644
index 0000000..63ca223
--- /dev/null
+++ b/tests/tests.py
@@ -0,0 +1,15 @@
+#!/usr/bin/env python3
+
+# MS ANNIKA FDR VALIDATOR - TESTS
+# 2024 (c) Micha Johannes Birklbauer
+# https://github.com/michabirklbauer/
+# micha.birklbauer@gmail.com
+
+# test 1
+def test1_msannika_fdr():
+
+    from msannika_fdr import main
+
+    result = main(["DSSO_CSMs.xlsx"])
+
+    assert True