From 1df42f083b851121d2a18c3bde53d65343a454a3 Mon Sep 17 00:00:00 2001
From: Pavel R <prozskov@gmail.com>
Date: Tue, 19 Mar 2024 14:25:36 +0100
Subject: [PATCH] Temporary remove specimen checking Ref:
 https://github.com/hl7au/au-fhir-core-inferno/issues/18

---
 .../diagnosticresult_path_must_support_test.rb         |  1 -
 .../diagnosticresult_path_reference_resolution_test.rb |  1 -
 .../v0.3.0-ballot/diagnosticresult_path/metadata.yml   |  5 -----
 .../generated/v0.3.0-ballot/metadata.yml               |  5 -----
 .../generator/must_support_metadata_extractor.rb       | 10 ++++++++++
 5 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_must_support_test.rb b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_must_support_test.rb
index ef882fa4..1df7eae3 100644
--- a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_must_support_test.rb
+++ b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_must_support_test.rb
@@ -28,7 +28,6 @@ class DiagnosticresultPathMustSupportTest < Inferno::Test
         * Observation.referenceRange.low
         * Observation.referenceRange.text
         * Observation.referenceRange.type
-        * Observation.specimen
         * Observation.status
         * Observation.subject
         * Observation.value[x]
diff --git a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_reference_resolution_test.rb b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_reference_resolution_test.rb
index 8517bdca..90729670 100644
--- a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_reference_resolution_test.rb
+++ b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/diagnosticresult_path_reference_resolution_test.rb
@@ -17,7 +17,6 @@ class DiagnosticresultPathReferenceResolutionTest < Inferno::Test
 
         * Observation.hasMember
         * Observation.performer
-        * Observation.specimen
         * Observation.subject
       )
 
diff --git a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/metadata.yml b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/metadata.yml
index acf1aec3..086f3334 100644
--- a/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/metadata.yml
+++ b/lib/au_core_test_kit/generated/v0.3.0-ballot/diagnosticresult_path/metadata.yml
@@ -171,11 +171,6 @@
   - :path: value[x]
   - :path: interpretation
   - :path: note
-  - :path: specimen
-    :types:
-    - Reference
-    :target_profiles:
-    - http://hl7.org.au/fhir/StructureDefinition/au-specimen
   - :path: referenceRange
   - :path: referenceRange.low
   - :path: referenceRange.high
diff --git a/lib/au_core_test_kit/generated/v0.3.0-ballot/metadata.yml b/lib/au_core_test_kit/generated/v0.3.0-ballot/metadata.yml
index 74fdb9a1..95f02ccf 100644
--- a/lib/au_core_test_kit/generated/v0.3.0-ballot/metadata.yml
+++ b/lib/au_core_test_kit/generated/v0.3.0-ballot/metadata.yml
@@ -1076,11 +1076,6 @@
     - :path: value[x]
     - :path: interpretation
     - :path: note
-    - :path: specimen
-      :types:
-      - Reference
-      :target_profiles:
-      - http://hl7.org.au/fhir/StructureDefinition/au-specimen
     - :path: referenceRange
     - :path: referenceRange.low
     - :path: referenceRange.high
diff --git a/lib/au_core_test_kit/generator/must_support_metadata_extractor.rb b/lib/au_core_test_kit/generator/must_support_metadata_extractor.rb
index 4b1a18bb..47b59802 100644
--- a/lib/au_core_test_kit/generator/must_support_metadata_extractor.rb
+++ b/lib/au_core_test_kit/generator/must_support_metadata_extractor.rb
@@ -335,6 +335,7 @@ def handle_special_cases
         remove_observation_method_attribute
         remove_observation_value_attribute
         remove_lipid_result_attributes
+        remove_specimen_attribute
 
         case profile.version
         when '3.1.1'
@@ -350,6 +351,15 @@ def handle_special_cases
         end
       end
 
+    def remove_specimen_attribute
+      # TODO: Temporary solution https://github.com/hl7au/au-fhir-core-inferno/issues/18
+      if profile.id == 'au-core-diagnosticresult-path'
+        @must_supports[:elements].delete_if do |element|
+          ['specimen'].include? element[:path]
+        end
+      end
+    end
+
     def remove_lipid_result_attributes
       # TODO: This code block should be discussed.
       # We need to understand why there are a lot of extra attributes