index.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import altair as alt\n",
    "import pandas as pd"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Data\n",
    "## Input File Format\n",
    "The input file format is identical to \"Options 1: File\" in UpSetR-shiny (https://github.com/hms-dbmi/UpSetR-shiny)\n",
    "\n",
    "- Columns are `attribute 1, attribute 2, ... attribute N, set 1, set2, ..., set M` where `set` columns contain either `1` or `0`, `1` indicating the '⬤' representation in UpSet)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "- Demo Data: COVID Symptom Tracker April 7 (via https://www.nature.com/articles/d41586-020-00154-w)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<img src=\"https://media.nature.com/lw800/magazine-assets/d41586-020-00154-w/d41586-020-00154-w_17880786.jpg\" alt=\"demo_diagram\" style=\"width:300px;\"/>"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>Shortness of Breath</th>\n",
       "      <th>Diarrhea</th>\n",
       "      <th>Fever</th>\n",
       "      <th>Cough</th>\n",
       "      <th>Anosmia</th>\n",
       "      <th>Fatigue</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>2</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>3</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>4</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>5</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   id  Shortness of Breath  Diarrhea  Fever  Cough  Anosmia  Fatigue\n",
       "0   1                    0         0      0      0        1        1\n",
       "1   2                    0         0      0      0        1        1\n",
       "2   3                    0         0      0      0        1        1\n",
       "3   4                    0         0      0      0        1        1\n",
       "4   5                    0         0      0      0        1        1"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Use the latest data from https://figshare.com/articles/covid_symptoms_table_csv/12148893\n",
    "df = pd.read_csv(\"https://ndownloader.figshare.com/files/22339791\")\n",
    "\n",
    "df.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Visualization\n",
    "#### The UpSetAltair visualizations contain three main views: \n",
    "\n",
    "(1) **vertical bar chart** on the top showing the cardinality of each intersecting set;\n",
    "\n",
    "(2) **matrix view** on the bottom-left showing the intersecting set;\n",
    "\n",
    "(3) **horizontal bar chart** on the bottom-right showing the cardinality of each set.\n",
    "\n",
    "#### Options:\n",
    "1. Specify sets of interest (e.g., `[\"Comedy\", \"Action\", \"Adventure\"]`)\n",
    "2. ~~Show empty intersections or not~~ (not yet supported)\n",
    "3. Sorting type: `frequency` or `degree`\n",
    "4. Sorting order: `descending` or `ascending`"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Top-level altair configuration\n",
    "def upsetaltair_top_level_configuration(\n",
    "    base,\n",
    "    legend_orient=\"top-left\",\n",
    "    legend_symbol_size=30\n",
    "):\n",
    "    return base.configure_view(\n",
    "        stroke=None\n",
    "    ).configure_title(\n",
    "        fontSize=18,\n",
    "        fontWeight=400,\n",
    "        anchor=\"start\",\n",
    "        subtitlePadding=10\n",
    "    ).configure_axis(\n",
    "        labelFontSize=14,\n",
    "        labelFontWeight=300,\n",
    "        titleFontSize=16,\n",
    "        titleFontWeight=400,\n",
    "        titlePadding=10\n",
    "    ).configure_legend(\n",
    "        titleFontSize=16,\n",
    "        titleFontWeight=400,\n",
    "        labelFontSize=14,\n",
    "        labelFontWeight=300,\n",
    "        padding=20,\n",
    "        orient=legend_orient,\n",
    "        symbolType=\"circle\",\n",
    "        symbolSize=legend_symbol_size,\n",
    "    ).configure_concat(\n",
    "        spacing=0\n",
    "    )"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "def UpSetAltair(\n",
    "    data=None,\n",
    "    title=\"\",\n",
    "    subtitle=\"\",\n",
    "    sets=None,\n",
    "    abbre=None,\n",
    "    sort_by=\"frequency\",\n",
    "    sort_order=\"ascending\",\n",
    "    width=1200,\n",
    "    height=700,\n",
    "    height_ratio=0.6,\n",
    "    horizontal_bar_chart_width=300,\n",
    "    color_range=[\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"],\n",
    "    highlight_color=\"#EA4667\",\n",
    "    glyph_size=200,\n",
    "    set_label_bg_size=1000,\n",
    "    line_connection_size=2,\n",
    "    horizontal_bar_size=20,\n",
    "    vertical_bar_label_size=16,\n",
    "    vertical_bar_padding=20\n",
    "): \n",
    "    \"\"\"This function generates Altair-based interactive UpSet plots.\n",
    "    \n",
    "    Parameters:\n",
    "        - data (pandas.DataFrame): Tabular data containing the membership of each element (row) in \n",
    "            exclusive intersecting sets (column).\n",
    "        - sets (list): List of set names of interest to show in the UpSet plots. \n",
    "            This list reflects the order of sets to be shown in the plots as well.\n",
    "        - abbre (list): Abbreviated set names.\n",
    "        - sort_by (str): \"frequency\" or \"degree\"\n",
    "        - sort_order (str): \"ascending\" or \"descending\"\n",
    "        - width (int): Vertical size of the UpSet plot.\n",
    "        - height (int): Horizontal size of the UpSet plot.\n",
    "        - height_ratio (float): Ratio of height between upper and under views, ranges from 0 to 1.\n",
    "        - horizontal_bar_chart_width (int): Width of horizontal bar chart on the bottom-right.\n",
    "        - color_range (list): Color to encode sets.\n",
    "        - highlight_color (str): Color to encode intersecting sets upon mouse hover.\n",
    "        - glyph_size (int): Size of UpSet glyph (⬤).\n",
    "        - set_label_bg_size (int): Size of label background in the horizontal bar chart.\n",
    "        - line_connection_size (int): width of lines in matrix view.\n",
    "        - horizontal_bar_size (int): Height of bars in the horizontal bar chart.\n",
    "        - vertical_bar_label_size (int): Font size of texts in the vertical bar chart on the top.\n",
    "        - vertical_bar_padding (int): Gap between a pair of bars in the vertical bar charts.\n",
    "    \"\"\"\n",
    "\n",
    "    if (data is None) or (sets is None):\n",
    "        print(\"No data and/or a list of sets are provided\")\n",
    "        return\n",
    "    if (height_ratio < 0) or (1 < height_ratio):\n",
    "        print(\"height_ratio set to 0.5\")\n",
    "        height_ratio = 0.5\n",
    "    if len(sets) != len(abbre):\n",
    "        abbre = None\n",
    "        print(\"Dropping the `abbre` list because the lengths of `sets` and `abbre` are not identical.\")\n",
    "\n",
    "    \"\"\"\n",
    "    Data Preprocessing\n",
    "    \"\"\"\n",
    "    data[\"count\"] = 0\n",
    "    data = data[sets + [\"count\"]]\n",
    "    data = data.groupby(sets).count().reset_index()\n",
    "    \n",
    "    data[\"intersection_id\"] = data.index\n",
    "    data[\"degree\"] = data[sets].sum(axis=1)\n",
    "    data = data.sort_values(by=[\"count\"], ascending=True if sort_order == \"ascending\" else False)\n",
    "    \n",
    "    data = pd.melt(data, id_vars=[\n",
    "        \"intersection_id\", \"count\", \"degree\"\n",
    "    ])\n",
    "    data = data.rename(columns={\"variable\": \"set\", \"value\": \"is_intersect\"})\n",
    "    \n",
    "    if abbre == None:\n",
    "        abbre = sets\n",
    "\n",
    "    set_to_abbre = pd.DataFrame([ [sets[i], abbre[i]] for i in range(len(sets)) ], columns=[\"set\", \"set_abbre\"])\n",
    "    set_to_order = pd.DataFrame([ [sets[i], 1 + sets.index(sets[i])] for i in range(len(sets)) ], columns=[\"set\", \"set_order\"])\n",
    "\n",
    "    degree_calculation = \"\"\n",
    "    for s in sets:\n",
    "        degree_calculation += f\"(isDefined(datum['{s}']) ? datum['{s}'] : 0)\"\n",
    "        if sets[-1] != s:\n",
    "            degree_calculation += \"+\"\n",
    "    \n",
    "    \"\"\"\n",
    "    Selections\n",
    "    \"\"\"\n",
    "    legend_selection = alt.selection_multi(fields=[\"set\"], bind=\"legend\")\n",
    "    color_selection = alt.selection_single(fields=[\"intersection_id\"], on=\"mouseover\")\n",
    "    opacity_selection = alt.selection_single(fields=[\"intersection_id\"])\n",
    "    \n",
    "    \"\"\"\n",
    "    Styles\n",
    "    \"\"\"\n",
    "    vertical_bar_chart_height = height * height_ratio\n",
    "    matrix_height = height - vertical_bar_chart_height\n",
    "    matrix_width = width - horizontal_bar_chart_width\n",
    "    \n",
    "    vertical_bar_size = min(30, width / len(data[\"intersection_id\"].unique().tolist()) - vertical_bar_padding)\n",
    "    \n",
    "    main_color = \"#3A3A3A\"\n",
    "    brush_opacity = alt.condition(~opacity_selection, alt.value(1), alt.value(0.6))\n",
    "    brush_color = alt.condition(~color_selection, alt.value(main_color), alt.value(highlight_color))\n",
    "    \n",
    "    is_show_horizontal_bar_label_bg = len(abbre[0]) <= 2\n",
    "    horizontal_bar_label_bg_color = \"white\" if is_show_horizontal_bar_label_bg else \"black\"\n",
    "\n",
    "    x_sort = alt.Sort(\n",
    "        field=\"count\" if sort_by == \"frequency\" else \"degree\",\n",
    "        order=sort_order\n",
    "    )\n",
    "    tooltip = [\n",
    "        alt.Tooltip(\"max(count):Q\", title=\"Cardinality\"),\n",
    "        alt.Tooltip(\"degree:Q\", title=\"Degree\")\n",
    "    ]\n",
    "    \n",
    "    \"\"\"\n",
    "    Plots\n",
    "    \"\"\"\n",
    "    # To use native interactivity in Altair, we are using the data transformation functions\n",
    "    # supported in Altair.\n",
    "    base = alt.Chart(data).transform_filter(\n",
    "        legend_selection\n",
    "    ).transform_pivot(\n",
    "        # Right before this operation, columns should be:\n",
    "        # `count`, `set`, `is_intersect`, (`intersection_id`, `degree`, `set_order`, `set_abbre`)\n",
    "        # where (fields with brackets) should be dropped and recalculated later.\n",
    "        \"set\",\n",
    "        op=\"max\",\n",
    "        groupby=[\"intersection_id\", \"count\"],\n",
    "        value=\"is_intersect\"\n",
    "    ).transform_aggregate(\n",
    "        # count, set1, set2, ...\n",
    "        count=\"sum(count)\",\n",
    "        groupby=sets\n",
    "    ).transform_calculate(\n",
    "        # count, set1, set2, ...\n",
    "        degree=degree_calculation\n",
    "    ).transform_filter(\n",
    "        # count, set1, set2, ..., degree\n",
    "        alt.datum[\"degree\"] != 0\n",
    "    ).transform_window(\n",
    "        # count, set1, set2, ..., degree\n",
    "        intersection_id=\"row_number()\",\n",
    "        frame=[None, None]\n",
    "    ).transform_fold(\n",
    "        # count, set1, set2, ..., degree, intersection_id\n",
    "        sets, as_=[\"set\", \"is_intersect\"]\n",
    "    ).transform_lookup(\n",
    "        # count, set, is_intersect, degree, intersection_id\n",
    "        lookup=\"set\",\n",
    "        from_=alt.LookupData(set_to_abbre, \"set\", [\"set_abbre\"])\n",
    "    ).transform_lookup(\n",
    "        # count, set, is_intersect, degree, intersection_id, set_abbre\n",
    "        lookup=\"set\",\n",
    "        from_=alt.LookupData(set_to_order, \"set\", [\"set_order\"])\n",
    "    ).transform_filter(\n",
    "        # Make sure to remove the filtered sets.\n",
    "        legend_selection\n",
    "    ).transform_window(\n",
    "        # count, set, is_intersect, degree, intersection_id, set_abbre\n",
    "        set_order=\"distinct(set)\",\n",
    "        frame=[None, 0],\n",
    "        sort=[{\"field\": \"set_order\"}]\n",
    "    )\n",
    "    # Now, we have data in the following format:\n",
    "    # count, set, is_intersect, degree, intersection_id, set_abbre\n",
    "\n",
    "    # Cardinality by intersecting sets (vertical bar chart)\n",
    "    vertical_bar = base.mark_bar(color=main_color, size=vertical_bar_size).encode(\n",
    "        x=alt.X(\n",
    "            \"intersection_id:N\", \n",
    "            axis=alt.Axis(grid=False, labels=False, ticks=False, domain=True), \n",
    "            sort=x_sort,\n",
    "            title=None\n",
    "        ),\n",
    "        y=alt.Y(\n",
    "            \"max(count):Q\",\n",
    "            axis=alt.Axis(grid=False, tickCount=3, orient='right'),\n",
    "            title=\"Intersection Size\"\n",
    "        ),\n",
    "        color=brush_color,\n",
    "        tooltip=tooltip\n",
    "    ).properties(\n",
    "        width=matrix_width,\n",
    "        height=vertical_bar_chart_height\n",
    "    )\n",
    "\n",
    "    vertical_bar_text = vertical_bar.mark_text(\n",
    "        color=main_color, \n",
    "        dy=-10,\n",
    "        size=vertical_bar_label_size\n",
    "    ).encode(\n",
    "        text=alt.Text(\"count:Q\", format=\".0f\")\n",
    "    )\n",
    "\n",
    "    vertical_bar_chart = (vertical_bar + vertical_bar_text).add_selection(\n",
    "        color_selection\n",
    "    )\n",
    "    \n",
    "    # UpSet glyph view (matrix view)\n",
    "    circle_bg = vertical_bar.mark_circle(size=glyph_size, opacity=1).encode(\n",
    "        x=alt.X(\n",
    "            \"intersection_id:N\", \n",
    "            axis=alt.Axis(grid=False, labels=False, ticks=False, domain=False), \n",
    "            sort=x_sort,\n",
    "            title=None\n",
    "        ),\n",
    "        y=alt.Y(\n",
    "            \"set_order:N\",\n",
    "            axis=alt.Axis(grid=False, labels=False, ticks=False, domain=False),\n",
    "            title=None\n",
    "        ),\n",
    "        color=alt.value(\"#E6E6E6\")\n",
    "    ).properties(\n",
    "        height=matrix_height\n",
    "    )\n",
    "\n",
    "    rect_bg = circle_bg.mark_rect().transform_filter(\n",
    "        alt.datum[\"set_order\"] % 2 == 1\n",
    "    ).encode(\n",
    "        color=alt.value(\"#F7F7F7\")\n",
    "    )\n",
    "\n",
    "    circle = circle_bg.transform_filter(\n",
    "        alt.datum[\"is_intersect\"] == 1\n",
    "    ).encode(\n",
    "        color=brush_color\n",
    "    )\n",
    "\n",
    "    line_connection = vertical_bar.mark_bar(size=line_connection_size, color=main_color).transform_filter(\n",
    "        alt.datum[\"is_intersect\"] == 1\n",
    "    ).encode(\n",
    "        y=alt.Y(\"min(set_order):N\"),\n",
    "        y2=alt.Y2(\"max(set_order):N\")\n",
    "    )\n",
    "    \n",
    "    matrix_view = (circle + rect_bg + circle_bg + line_connection + circle).add_selection(\n",
    "        # Duplicate `circle` is to properly show tooltips.\n",
    "        color_selection\n",
    "    )\n",
    "\n",
    "    # Cardinality by sets (horizontal bar chart)\n",
    "    horizontal_bar_label_bg = base.mark_circle(size=set_label_bg_size).encode(\n",
    "        y=alt.Y(\n",
    "            \"set_order:N\",\n",
    "            axis=alt.Axis(grid=False, labels=False, ticks=False, domain=False),\n",
    "            title=None,\n",
    "        ),\n",
    "        color=alt.Color(\n",
    "            \"set:N\",\n",
    "            scale=alt.Scale(domain=sets, range=color_range),\n",
    "            title=None\n",
    "        ),\n",
    "        opacity=alt.value(1)\n",
    "    )\n",
    "    horizontal_bar_label = horizontal_bar_label_bg.mark_text(\n",
    "            align=(\"center\" if is_show_horizontal_bar_label_bg else \"center\")\n",
    "        ).encode(\n",
    "        text=alt.Text(\"set_abbre:N\"),\n",
    "        color=alt.value(horizontal_bar_label_bg_color)\n",
    "    )\n",
    "    horizontal_bar_axis = (horizontal_bar_label_bg + horizontal_bar_label) if is_show_horizontal_bar_label_bg else horizontal_bar_label\n",
    "    \n",
    "    horizontal_bar = horizontal_bar_label_bg.mark_bar(\n",
    "        size=horizontal_bar_size\n",
    "    ).transform_filter(\n",
    "        alt.datum[\"is_intersect\"] == 1\n",
    "    ).encode(\n",
    "        x=alt.X(\n",
    "            \"sum(count):Q\",\n",
    "            axis=alt.Axis(grid=False, tickCount=3),\n",
    "            title=\"Set Size\"\n",
    "        )\n",
    "    ).properties(\n",
    "        width=horizontal_bar_chart_width\n",
    "    )\n",
    "    \n",
    "    # Concat Plots\n",
    "    upsetaltair = alt.vconcat(\n",
    "        vertical_bar_chart,\n",
    "        alt.hconcat(\n",
    "            matrix_view, \n",
    "            horizontal_bar_axis, horizontal_bar, # horizontal bar chart\n",
    "            spacing=5\n",
    "        ).resolve_scale(\n",
    "            y=\"shared\"\n",
    "        ),\n",
    "        spacing=20\n",
    "    ).add_selection(\n",
    "        legend_selection\n",
    "    )\n",
    "    \n",
    "    # Apply top-level configuration\n",
    "    upsetaltair = upsetaltair_top_level_configuration(\n",
    "        upsetaltair, \n",
    "        legend_orient=\"top\",\n",
    "        legend_symbol_size=set_label_bg_size / 2.0\n",
    "    ).properties(\n",
    "        title={\n",
    "            \"text\": title,\n",
    "            \"subtitle\": subtitle,\n",
    "            \"fontSize\": 20,\n",
    "            \"fontWeight\": 500,\n",
    "            \"subtitleColor\": main_color,\n",
    "            \"subtitleFontSize\": 14\n",
    "        }\n",
    "    )\n",
    "    \n",
    "    return upsetaltair"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Examples w/ Different Options"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-1\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    const outputDiv = document.getElementById(\"altair-viz-1\");\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.0?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}, \"axis\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"titleFontSize\": 16, \"titleFontWeight\": 400, \"titlePadding\": 10}, \"concat\": {\"spacing\": 0}, \"legend\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"orient\": \"top\", \"padding\": 20, \"symbolSize\": 500.0, \"symbolType\": \"circle\", \"titleFontSize\": 16, \"titleFontWeight\": 400}, \"title\": {\"anchor\": \"start\", \"fontSize\": 18, \"fontWeight\": 400, \"subtitlePadding\": 10}}, \"vconcat\": [{\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 17.5}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector002\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"selection\": {\"selector002\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector001\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"text\", \"color\": \"#3A3A3A\", \"dy\": -10, \"size\": 16}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector002\"}}, \"value\": \"#EA4667\"}, \"text\": {\"type\": \"quantitative\", \"field\": \"count\", \"format\": \".0f\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}]}, {\"hconcat\": [{\"layer\": [{\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector002\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"selection\": {\"selector002\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector001\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": \"rect\", \"encoding\": {\"color\": {\"value\": \"#F7F7F7\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"((datum['set_order'] % 2) === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"value\": \"#E6E6E6\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 2}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector002\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"aggregate\": \"min\", \"field\": \"set_order\"}, \"y2\": {\"aggregate\": \"max\", \"field\": \"set_order\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector002\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}]}, {\"layer\": [{\"mark\": {\"type\": \"circle\", \"size\": 1000}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector001\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}, {\"mark\": {\"type\": \"text\", \"align\": \"center\"}, \"encoding\": {\"color\": {\"value\": \"white\"}, \"opacity\": {\"value\": 1}, \"text\": {\"type\": \"nominal\", \"field\": \"set_abbre\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}]}, {\"mark\": {\"type\": \"bar\", \"size\": 20}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"x\": {\"type\": \"quantitative\", \"aggregate\": \"sum\", \"axis\": {\"grid\": false, \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Set Size\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector001\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector001\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector001\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 300}], \"resolve\": {\"scale\": {\"y\": \"shared\"}}, \"spacing\": 5}], \"data\": {\"name\": \"data-51a18922e537214846aa112d1ccd2e10\"}, \"spacing\": 20, \"title\": {\"text\": \"Symptoms Reported by Users of the COVID Symptom Tracker App\", \"subtitle\": [\"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\", \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"], \"fontSize\": 20, \"fontWeight\": 500, \"subtitleColor\": \"#3A3A3A\", \"subtitleFontSize\": 14}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.0.json\", \"datasets\": {\"data-51a18922e537214846aa112d1ccd2e10\": [{\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}], \"data-edc52b94e708b8ac518e05227a1d24db\": [{\"set\": \"Shortness of Breath\", \"set_abbre\": \"B\"}, {\"set\": \"Diarrhea\", \"set_abbre\": \"D\"}, {\"set\": \"Fever\", \"set_abbre\": \"Fe\"}, {\"set\": \"Cough\", \"set_abbre\": \"C\"}, {\"set\": \"Anosmia\", \"set_abbre\": \"A\"}, {\"set\": \"Fatigue\", \"set_abbre\": \"Fa\"}], \"data-845b010f0be9092a4e24abf6f511af02\": [{\"set\": \"Shortness of Breath\", \"set_order\": 1}, {\"set\": \"Diarrhea\", \"set_order\": 2}, {\"set\": \"Fever\", \"set_order\": 3}, {\"set\": \"Cough\", \"set_order\": 4}, {\"set\": \"Anosmia\", \"set_order\": 5}, {\"set\": \"Fatigue\", \"set_order\": 6}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.VConcatChart(...)"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "UpSetAltair(\n",
    "    data=df.copy(),\n",
    "    title=\"Symptoms Reported by Users of the COVID Symptom Tracker App\",\n",
    "    subtitle=[\n",
    "        \"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\",\n",
    "        \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"\n",
    "    ],\n",
    "    sets=[\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"],\n",
    "    abbre=[\"B\", \"D\", \"Fe\", \"C\", \"A\", \"Fa\"],\n",
    "    sort_by=\"frequency\",\n",
    "    sort_order=\"ascending\",\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-2\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    const outputDiv = document.getElementById(\"altair-viz-2\");\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.0?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}, \"axis\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"titleFontSize\": 16, \"titleFontWeight\": 400, \"titlePadding\": 10}, \"concat\": {\"spacing\": 0}, \"legend\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"orient\": \"top\", \"padding\": 20, \"symbolSize\": 500.0, \"symbolType\": \"circle\", \"titleFontSize\": 16, \"titleFontWeight\": 400}, \"title\": {\"anchor\": \"start\", \"fontSize\": 18, \"fontWeight\": 400, \"subtitlePadding\": 10}}, \"vconcat\": [{\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 17.5}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector005\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"selection\": {\"selector005\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector004\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"text\", \"color\": \"#3A3A3A\", \"dy\": -10, \"size\": 16}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector005\"}}, \"value\": \"#EA4667\"}, \"text\": {\"type\": \"quantitative\", \"field\": \"count\", \"format\": \".0f\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}]}, {\"hconcat\": [{\"layer\": [{\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector005\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"selection\": {\"selector005\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector004\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": \"rect\", \"encoding\": {\"color\": {\"value\": \"#F7F7F7\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"((datum['set_order'] % 2) === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"value\": \"#E6E6E6\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 2}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector005\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"aggregate\": \"min\", \"field\": \"set_order\"}, \"y2\": {\"aggregate\": \"max\", \"field\": \"set_order\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector005\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}]}, {\"layer\": [{\"mark\": {\"type\": \"circle\", \"size\": 1000}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector004\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}, {\"mark\": {\"type\": \"text\", \"align\": \"center\"}, \"encoding\": {\"color\": {\"value\": \"white\"}, \"opacity\": {\"value\": 1}, \"text\": {\"type\": \"nominal\", \"field\": \"set_abbre\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}]}, {\"mark\": {\"type\": \"bar\", \"size\": 20}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"x\": {\"type\": \"quantitative\", \"aggregate\": \"sum\", \"axis\": {\"grid\": false, \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Set Size\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector004\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector004\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector004\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 300}], \"resolve\": {\"scale\": {\"y\": \"shared\"}}, \"spacing\": 5}], \"data\": {\"name\": \"data-51a18922e537214846aa112d1ccd2e10\"}, \"spacing\": 20, \"title\": {\"text\": \"Symptoms Reported by Users of the COVID Symptom Tracker App\", \"subtitle\": [\"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\", \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"], \"fontSize\": 20, \"fontWeight\": 500, \"subtitleColor\": \"#3A3A3A\", \"subtitleFontSize\": 14}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.0.json\", \"datasets\": {\"data-51a18922e537214846aa112d1ccd2e10\": [{\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}], \"data-edc52b94e708b8ac518e05227a1d24db\": [{\"set\": \"Shortness of Breath\", \"set_abbre\": \"B\"}, {\"set\": \"Diarrhea\", \"set_abbre\": \"D\"}, {\"set\": \"Fever\", \"set_abbre\": \"Fe\"}, {\"set\": \"Cough\", \"set_abbre\": \"C\"}, {\"set\": \"Anosmia\", \"set_abbre\": \"A\"}, {\"set\": \"Fatigue\", \"set_abbre\": \"Fa\"}], \"data-845b010f0be9092a4e24abf6f511af02\": [{\"set\": \"Shortness of Breath\", \"set_order\": 1}, {\"set\": \"Diarrhea\", \"set_order\": 2}, {\"set\": \"Fever\", \"set_order\": 3}, {\"set\": \"Cough\", \"set_order\": 4}, {\"set\": \"Anosmia\", \"set_order\": 5}, {\"set\": \"Fatigue\", \"set_order\": 6}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.VConcatChart(...)"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "UpSetAltair(\n",
    "    data=df.copy(), \n",
    "    title=\"Symptoms Reported by Users of the COVID Symptom Tracker App\",\n",
    "    subtitle=[\n",
    "        \"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\",\n",
    "        \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"\n",
    "    ],\n",
    "    sets=[\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"],\n",
    "    abbre=[\"B\", \"D\", \"Fe\", \"C\", \"A\", \"Fa\"],\n",
    "    sort_by=\"degree\",\n",
    "    sort_order=\"ascending\",\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-3\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    const outputDiv = document.getElementById(\"altair-viz-3\");\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.0?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}, \"axis\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"titleFontSize\": 16, \"titleFontWeight\": 400, \"titlePadding\": 10}, \"concat\": {\"spacing\": 0}, \"legend\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"orient\": \"top\", \"padding\": 20, \"symbolSize\": 325.0, \"symbolType\": \"circle\", \"titleFontSize\": 16, \"titleFontWeight\": 400}, \"title\": {\"anchor\": \"start\", \"fontSize\": 18, \"fontWeight\": 400, \"subtitlePadding\": 10}}, \"vconcat\": [{\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 14.125}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector008\"}}, \"value\": \"#777\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 325.0, \"selection\": {\"selector008\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector007\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 700}, {\"mark\": {\"type\": \"text\", \"color\": \"#3A3A3A\", \"dy\": -10, \"size\": 12}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector008\"}}, \"value\": \"#777\"}, \"text\": {\"type\": \"quantitative\", \"field\": \"count\", \"format\": \".0f\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 325.0, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 700}]}, {\"hconcat\": [{\"layer\": [{\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 100}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector008\"}}, \"value\": \"#777\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 175.0, \"selection\": {\"selector008\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector007\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 700}, {\"mark\": \"rect\", \"encoding\": {\"color\": {\"value\": \"#F7F7F7\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 175.0, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"((datum['set_order'] % 2) === 1)\"}], \"width\": 700}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 100}, \"encoding\": {\"color\": {\"value\": \"#E6E6E6\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 175.0, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 700}, {\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 1}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector008\"}}, \"value\": \"#777\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"aggregate\": \"min\", \"field\": \"set_order\"}, \"y2\": {\"aggregate\": \"max\", \"field\": \"set_order\"}}, \"height\": 325.0, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 700}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 100}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector008\"}}, \"value\": \"#777\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"degree\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 175.0, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 700}]}, {\"layer\": [{\"mark\": {\"type\": \"circle\", \"size\": 650}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#F0E442\", \"#E69F00\", \"#D55E00\", \"#CC79A7\", \"#0072B2\", \"#56B4E9\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector007\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}, {\"mark\": {\"type\": \"text\", \"align\": \"center\"}, \"encoding\": {\"color\": {\"value\": \"white\"}, \"opacity\": {\"value\": 1}, \"text\": {\"type\": \"nominal\", \"field\": \"set_abbre\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}]}, {\"mark\": {\"type\": \"bar\", \"size\": 16}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"range\": [\"#F0E442\", \"#E69F00\", \"#D55E00\", \"#CC79A7\", \"#0072B2\", \"#56B4E9\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"x\": {\"type\": \"quantitative\", \"aggregate\": \"sum\", \"axis\": {\"grid\": false, \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Set Size\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector007\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector007\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"]}, {\"calculate\": \"(isDefined(datum['Shortness of Breath']) ? datum['Shortness of Breath'] : 0)+(isDefined(datum['Diarrhea']) ? datum['Diarrhea'] : 0)+(isDefined(datum['Fever']) ? datum['Fever'] : 0)+(isDefined(datum['Cough']) ? datum['Cough'] : 0)+(isDefined(datum['Anosmia']) ? datum['Anosmia'] : 0)+(isDefined(datum['Fatigue']) ? datum['Fatigue'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-edc52b94e708b8ac518e05227a1d24db\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-845b010f0be9092a4e24abf6f511af02\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector007\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 200}], \"resolve\": {\"scale\": {\"y\": \"shared\"}}, \"spacing\": 5}], \"data\": {\"name\": \"data-51a18922e537214846aa112d1ccd2e10\"}, \"spacing\": 20, \"title\": {\"text\": \"Symptoms Reported by Users of the COVID Symptom Tracker App\", \"subtitle\": [\"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\", \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"], \"fontSize\": 20, \"fontWeight\": 500, \"subtitleColor\": \"#3A3A3A\", \"subtitleFontSize\": 14}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.0.json\", \"datasets\": {\"data-51a18922e537214846aa112d1ccd2e10\": [{\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Shortness of Breath\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Diarrhea\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fever\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fever\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Cough\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Cough\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Anosmia\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Anosmia\", \"is_intersect\": 1}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 21, \"count\": 5, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 28, \"count\": 7, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 7, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 30, \"count\": 8, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 10, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 26, \"count\": 11, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 11, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 12, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 12, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 27, \"count\": 17, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 17, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 29, \"count\": 18, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 24, \"count\": 22, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 31, \"count\": 23, \"degree\": 6, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 25, \"count\": 26, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 28, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 31, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 41, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 43, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 46, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 50, \"degree\": 5, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 54, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 57, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 64, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 69, \"degree\": 4, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 140, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 179, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 198, \"degree\": 1, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 5, \"count\": 259, \"degree\": 3, \"set\": \"Fatigue\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 281, \"degree\": 2, \"set\": \"Fatigue\", \"is_intersect\": 1}], \"data-edc52b94e708b8ac518e05227a1d24db\": [{\"set\": \"Shortness of Breath\", \"set_abbre\": \"B\"}, {\"set\": \"Diarrhea\", \"set_abbre\": \"D\"}, {\"set\": \"Fever\", \"set_abbre\": \"Fe\"}, {\"set\": \"Cough\", \"set_abbre\": \"C\"}, {\"set\": \"Anosmia\", \"set_abbre\": \"A\"}, {\"set\": \"Fatigue\", \"set_abbre\": \"Fa\"}], \"data-845b010f0be9092a4e24abf6f511af02\": [{\"set\": \"Shortness of Breath\", \"set_order\": 1}, {\"set\": \"Diarrhea\", \"set_order\": 2}, {\"set\": \"Fever\", \"set_order\": 3}, {\"set\": \"Cough\", \"set_order\": 4}, {\"set\": \"Anosmia\", \"set_order\": 5}, {\"set\": \"Fatigue\", \"set_order\": 6}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.VConcatChart(...)"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "UpSetAltair(\n",
    "    data=df.copy(),     \n",
    "    title=\"Symptoms Reported by Users of the COVID Symptom Tracker App\",\n",
    "    subtitle=[\n",
    "        \"Story & Data: https://www.nature.com/articles/d41586-020-00154-w\",\n",
    "        \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"\n",
    "    ],\n",
    "    sets=[\"Shortness of Breath\", \"Diarrhea\", \"Fever\", \"Cough\", \"Anosmia\", \"Fatigue\"],\n",
    "    abbre=[\"B\", \"D\", \"Fe\", \"C\", \"A\", \"Fa\"],\n",
    "    sort_by=\"degree\",\n",
    "    sort_order=\"ascending\",\n",
    "    \n",
    "    # Custom options:\n",
    "    width=900,\n",
    "    height=500,\n",
    "    height_ratio=0.65,\n",
    "    color_range=[\"#F0E442\", \"#E69F00\", \"#D55E00\", \"#CC79A7\", \"#0072B2\", \"#56B4E9\"],\n",
    "    highlight_color=\"#777\",\n",
    "    horizontal_bar_chart_width=200,\n",
    "    glyph_size=100,\n",
    "    set_label_bg_size=650,\n",
    "    line_connection_size=1,\n",
    "    horizontal_bar_size=16,\n",
    "    vertical_bar_label_size=12,\n",
    "    vertical_bar_padding=14\n",
    ")"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## COVID Mutations Data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "import json\n",
    "from urllib.request import urlopen\n",
    "import re"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Alpha</th>\n",
       "      <th>Beta</th>\n",
       "      <th>Gamma</th>\n",
       "      <th>Delta</th>\n",
       "      <th>Kappa</th>\n",
       "      <th>Omicron</th>\n",
       "      <th>Eta</th>\n",
       "      <th>Iota</th>\n",
       "      <th>Lambda</th>\n",
       "      <th>Mu</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>82</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>83</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>85</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>86</th>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>87 rows × 10 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    Alpha  Beta  Gamma  Delta  Kappa  Omicron  Eta  Iota  Lambda  Mu\n",
       "0       0     0      0      1      0        0    0     0       0   1\n",
       "1       1     0      0      0      0        0    0     0       0   0\n",
       "2       0     0      0      0      0        0    1     0       0   0\n",
       "3       0     0      0      0      0        0    0     0       0   0\n",
       "4       0     0      0      0      0        0    0     0       0   1\n",
       "..    ...   ...    ...    ...    ...      ...  ...   ...     ...  ..\n",
       "82      0     0      0      0      0        1    0     1       0   1\n",
       "83      0     0      1      0      0        1    0     0       0   0\n",
       "84      0     0      0      1      0        0    0     0       0   0\n",
       "85      0     0      0      0      0        1    0     0       0   0\n",
       "86      0     0      0      0      0        1    0     0       0   0\n",
       "\n",
       "[87 rows x 10 columns]"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Retreived on Nov 30, 2021\n",
    "res = urlopen('https://raw.githubusercontent.com/hodcroftlab/covariants/master/scripts/mutation_comparison.py')\n",
    "\n",
    "# Remove assignment part\n",
    "json_str = res.read().decode().replace('mutation_comparison = ', '')\n",
    "\n",
    "# Remove trailing comma\n",
    "json_str = re.sub(\",[ \\t\\r\\n]+}\", \"}\", json_str)\n",
    "json_str = re.sub(\",[ \\t\\r\\n]+\\]\", \"]\", json_str)\n",
    "\n",
    "json_data = json.loads(json_str)\n",
    "\n",
    "# Restructure and get unique mutations\n",
    "unique_mutations = set([])\n",
    "for name in json_data:\n",
    "    mutations = json_data[name]['nonsynonymous']\n",
    "    json_data[name] = mutations\n",
    "    unique_mutations.update(mutations)\n",
    "\n",
    "unique_vars = list(json_data.keys())\n",
    "unique_mutations = list(unique_mutations)\n",
    "\n",
    "unique_vars, json_data, unique_mutations\n",
    "\n",
    "# Generate data for UpSet\n",
    "data = {}\n",
    "for (i, m) in enumerate(unique_mutations):\n",
    "    for v in unique_vars:\n",
    "        if i == 0:\n",
    "            data[v] = []\n",
    "        data[v].append(1 if m in json_data[v] else 0)\n",
    "\n",
    "df = pd.DataFrame(data)\n",
    "\n",
    "df = df.set_axis(['Alpha', 'Beta', 'Gamma', 'Delta', 'Kappa', 'Omicron', 'Eta', 'Iota', 'Lambda', 'Mu', '-'], axis=1)\n",
    "df = df.drop('-', axis=1)\n",
    "df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-4\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    const outputDiv = document.getElementById(\"altair-viz-4\");\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.0?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}, \"axis\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"titleFontSize\": 16, \"titleFontWeight\": 400, \"titlePadding\": 10}, \"concat\": {\"spacing\": 0}, \"legend\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"orient\": \"top\", \"padding\": 20, \"symbolSize\": 325.0, \"symbolType\": \"circle\", \"titleFontSize\": 16, \"titleFontWeight\": 400}, \"title\": {\"anchor\": \"start\", \"fontSize\": 18, \"fontWeight\": 400, \"subtitlePadding\": 10}}, \"vconcat\": [{\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 28.0}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector011\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"selection\": {\"selector011\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector010\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"text\", \"color\": \"#3A3A3A\", \"dy\": -10, \"size\": 16}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector011\"}}, \"value\": \"#EA4667\"}, \"text\": {\"type\": \"quantitative\", \"field\": \"count\", \"format\": \".0f\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}]}, {\"hconcat\": [{\"layer\": [{\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector011\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"selection\": {\"selector011\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector010\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": \"rect\", \"encoding\": {\"color\": {\"value\": \"#F7F7F7\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"((datum['set_order'] % 2) === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"value\": \"#E6E6E6\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 2}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector011\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"aggregate\": \"min\", \"field\": \"set_order\"}, \"y2\": {\"aggregate\": \"max\", \"field\": \"set_order\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector011\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}]}, {\"layer\": [{\"mark\": {\"type\": \"circle\", \"size\": 650}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"range\": [\"#5778a4\", \"#e49444\", \"#d1615d\", \"#85b6b2\", \"#6a9f58\", \"#e7ca60\", \"#a87c9f\", \"#f1a2a9\", \"#967662\", \"#b8b0ac\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector010\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}, {\"mark\": {\"type\": \"text\", \"align\": \"center\"}, \"encoding\": {\"color\": {\"value\": \"white\"}, \"opacity\": {\"value\": 1}, \"text\": {\"type\": \"nominal\", \"field\": \"set_abbre\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}]}, {\"mark\": {\"type\": \"bar\", \"size\": 20}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"range\": [\"#5778a4\", \"#e49444\", \"#d1615d\", \"#85b6b2\", \"#6a9f58\", \"#e7ca60\", \"#a87c9f\", \"#f1a2a9\", \"#967662\", \"#b8b0ac\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"x\": {\"type\": \"quantitative\", \"aggregate\": \"sum\", \"axis\": {\"grid\": false, \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Set Size\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector010\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector010\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Eta']) ? datum['Eta'] : 0)+(isDefined(datum['Iota']) ? datum['Iota'] : 0)+(isDefined(datum['Kappa']) ? datum['Kappa'] : 0)+(isDefined(datum['Lambda']) ? datum['Lambda'] : 0)+(isDefined(datum['Mu']) ? datum['Mu'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-0c54be35c9ac735ab4b459c7ecb719a7\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-9046df94bfba44543a9e51fb4638a9b7\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector010\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 300}], \"resolve\": {\"scale\": {\"y\": \"shared\"}}, \"spacing\": 5}], \"data\": {\"name\": \"data-ff7c05458382f4884c4ecea26f263ada\"}, \"spacing\": 20, \"title\": {\"text\": \"Shared Mutations of COVID Variants\", \"subtitle\": [\"Story & Data: https://covariants.org/shared-mutations\", \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"], \"fontSize\": 20, \"fontWeight\": 500, \"subtitleColor\": \"#3A3A3A\", \"subtitleFontSize\": 14}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.0.json\", \"datasets\": {\"data-ff7c05458382f4884c4ecea26f263ada\": [{\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Eta\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Eta\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 1}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 1}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Eta\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Eta\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Iota\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Iota\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 1}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Iota\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Iota\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Kappa\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Kappa\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Kappa\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Lambda\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 1}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Lambda\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 1}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Mu\", \"is_intersect\": 0}, {\"intersection_id\": 24, \"count\": 1, \"degree\": 10, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 21, \"count\": 1, \"degree\": 3, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 19, \"count\": 1, \"degree\": 5, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 18, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 17, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 16, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 1, \"degree\": 3, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 14, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 23, \"count\": 1, \"degree\": 5, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 2, \"degree\": 0, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 2, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 2, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 3, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 3, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 3, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 22, \"count\": 3, \"degree\": 3, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 20, \"count\": 4, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 15, \"count\": 5, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 13, \"count\": 7, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 13, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 24, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 1}], \"data-0c54be35c9ac735ab4b459c7ecb719a7\": [{\"set\": \"Alpha\", \"set_abbre\": \"Al\"}, {\"set\": \"Beta\", \"set_abbre\": \"Be\"}, {\"set\": \"Gamma\", \"set_abbre\": \"Ga\"}, {\"set\": \"Delta\", \"set_abbre\": \"De\"}, {\"set\": \"Eta\", \"set_abbre\": \"Et\"}, {\"set\": \"Iota\", \"set_abbre\": \"Io\"}, {\"set\": \"Kappa\", \"set_abbre\": \"Ka\"}, {\"set\": \"Lambda\", \"set_abbre\": \"La\"}, {\"set\": \"Mu\", \"set_abbre\": \"Mu\"}, {\"set\": \"Omicron\", \"set_abbre\": \"Om\"}], \"data-9046df94bfba44543a9e51fb4638a9b7\": [{\"set\": \"Alpha\", \"set_order\": 1}, {\"set\": \"Beta\", \"set_order\": 2}, {\"set\": \"Gamma\", \"set_order\": 3}, {\"set\": \"Delta\", \"set_order\": 4}, {\"set\": \"Eta\", \"set_order\": 5}, {\"set\": \"Iota\", \"set_order\": 6}, {\"set\": \"Kappa\", \"set_order\": 7}, {\"set\": \"Lambda\", \"set_order\": 8}, {\"set\": \"Mu\", \"set_order\": 9}, {\"set\": \"Omicron\", \"set_order\": 10}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.VConcatChart(...)"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "UpSetAltair(\n",
    "    data=df.copy(),\n",
    "    title=\"Shared Mutations of COVID Variants\",\n",
    "    subtitle=[\n",
    "        \"Story & Data: https://covariants.org/shared-mutations\",\n",
    "        \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"\n",
    "    ],\n",
    "    sets=[\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Eta\", \"Iota\", \"Kappa\", \"Lambda\", \"Mu\", \"Omicron\"],\n",
    "    abbre=[\"Al\", \"Be\", \"Ga\", \"De\", \"Et\", \"Io\", \"Ka\", \"La\", \"Mu\", \"Om\"],\n",
    "    sort_by=\"frequency\",\n",
    "    sort_order=\"ascending\",\n",
    "    color_range=['#5778a4','#e49444', '#d1615d', '#85b6b2', '#6a9f58', '#e7ca60', '#a87c9f', '#f1a2a9', '#967662', '#b8b0ac'],\n",
    "    set_label_bg_size=650,\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "\n",
       "<div id=\"altair-viz-5\"></div>\n",
       "<script type=\"text/javascript\">\n",
       "  (function(spec, embedOpt){\n",
       "    const outputDiv = document.getElementById(\"altair-viz-5\");\n",
       "    const paths = {\n",
       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.0?noext\",\n",
       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
       "    };\n",
       "\n",
       "    function loadScript(lib) {\n",
       "      return new Promise(function(resolve, reject) {\n",
       "        var s = document.createElement('script');\n",
       "        s.src = paths[lib];\n",
       "        s.async = true;\n",
       "        s.onload = () => resolve(paths[lib]);\n",
       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
       "      });\n",
       "    }\n",
       "\n",
       "    function showError(err) {\n",
       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
       "      throw err;\n",
       "    }\n",
       "\n",
       "    function displayChart(vegaEmbed) {\n",
       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
       "    }\n",
       "\n",
       "    if(typeof define === \"function\" && define.amd) {\n",
       "      requirejs.config({paths});\n",
       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
       "    } else if (typeof vegaEmbed === \"function\") {\n",
       "      displayChart(vegaEmbed);\n",
       "    } else {\n",
       "      loadScript(\"vega\")\n",
       "        .then(() => loadScript(\"vega-lite\"))\n",
       "        .then(() => loadScript(\"vega-embed\"))\n",
       "        .catch(showError)\n",
       "        .then(() => displayChart(vegaEmbed));\n",
       "    }\n",
       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}, \"axis\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"titleFontSize\": 16, \"titleFontWeight\": 400, \"titlePadding\": 10}, \"concat\": {\"spacing\": 0}, \"legend\": {\"labelFontSize\": 14, \"labelFontWeight\": 300, \"orient\": \"top\", \"padding\": 20, \"symbolSize\": 500.0, \"symbolType\": \"circle\", \"titleFontSize\": 16, \"titleFontWeight\": 400}, \"title\": {\"anchor\": \"start\", \"fontSize\": 18, \"fontWeight\": 400, \"subtitlePadding\": 10}}, \"vconcat\": [{\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 30}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector014\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"selection\": {\"selector014\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector013\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"text\", \"color\": \"#3A3A3A\", \"dy\": -10, \"size\": 16}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector014\"}}, \"value\": \"#EA4667\"}, \"text\": {\"type\": \"quantitative\", \"field\": \"count\", \"format\": \".0f\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"quantitative\", \"aggregate\": \"max\", \"axis\": {\"grid\": false, \"orient\": \"right\", \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Intersection Size\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}]}, {\"hconcat\": [{\"layer\": [{\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector014\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"selection\": {\"selector014\": {\"type\": \"single\", \"fields\": [\"intersection_id\"], \"on\": \"mouseover\"}, \"selector013\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": \"rect\", \"encoding\": {\"color\": {\"value\": \"#F7F7F7\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"((datum['set_order'] % 2) === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"value\": \"#E6E6E6\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}], \"width\": 900}, {\"mark\": {\"type\": \"bar\", \"color\": \"#3A3A3A\", \"size\": 2}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector014\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": true, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"aggregate\": \"min\", \"field\": \"set_order\"}, \"y2\": {\"aggregate\": \"max\", \"field\": \"set_order\"}}, \"height\": 420.0, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}, {\"mark\": {\"type\": \"circle\", \"opacity\": 1, \"size\": 200}, \"encoding\": {\"color\": {\"condition\": {\"value\": \"#3A3A3A\", \"selection\": {\"not\": \"selector014\"}}, \"value\": \"#EA4667\"}, \"tooltip\": [{\"type\": \"quantitative\", \"aggregate\": \"max\", \"field\": \"count\", \"title\": \"Cardinality\"}, {\"type\": \"quantitative\", \"field\": \"degree\", \"title\": \"Degree\"}], \"x\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"intersection_id\", \"sort\": {\"field\": \"count\", \"order\": \"ascending\"}, \"title\": null}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"height\": 280.0, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 900}]}, {\"layer\": [{\"mark\": {\"type\": \"circle\", \"size\": 1000}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector013\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}, {\"mark\": {\"type\": \"text\", \"align\": \"center\"}, \"encoding\": {\"color\": {\"value\": \"white\"}, \"opacity\": {\"value\": 1}, \"text\": {\"type\": \"nominal\", \"field\": \"set_abbre\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}]}]}, {\"mark\": {\"type\": \"bar\", \"size\": 20}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"set\", \"scale\": {\"domain\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"range\": [\"#55A8DB\", \"#3070B5\", \"#30363F\", \"#F1AD60\", \"#DF6234\", \"#BDC6CA\"]}, \"title\": null}, \"opacity\": {\"value\": 1}, \"x\": {\"type\": \"quantitative\", \"aggregate\": \"sum\", \"axis\": {\"grid\": false, \"tickCount\": 3}, \"field\": \"count\", \"title\": \"Set Size\"}, \"y\": {\"type\": \"nominal\", \"axis\": {\"domain\": false, \"grid\": false, \"labels\": false, \"ticks\": false}, \"field\": \"set_order\", \"title\": null}}, \"selection\": {\"selector013\": {\"type\": \"multi\", \"fields\": [\"set\"], \"bind\": \"legend\"}}, \"transform\": [{\"filter\": {\"selection\": \"selector013\"}}, {\"pivot\": \"set\", \"value\": \"is_intersect\", \"groupby\": [\"intersection_id\", \"count\"], \"op\": \"max\"}, {\"aggregate\": [{\"op\": \"sum\", \"field\": \"count\", \"as\": \"count\"}], \"groupby\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"]}, {\"calculate\": \"(isDefined(datum['Alpha']) ? datum['Alpha'] : 0)+(isDefined(datum['Beta']) ? datum['Beta'] : 0)+(isDefined(datum['Gamma']) ? datum['Gamma'] : 0)+(isDefined(datum['Delta']) ? datum['Delta'] : 0)+(isDefined(datum['Omicron']) ? datum['Omicron'] : 0)\", \"as\": \"degree\"}, {\"filter\": \"(datum['degree'] !== 0)\"}, {\"window\": [{\"op\": \"row_number\", \"field\": \"\", \"as\": \"intersection_id\"}], \"frame\": [null, null]}, {\"fold\": [\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"], \"as\": [\"set\", \"is_intersect\"]}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-58b9e545af6da95f54e5bee53e97fc6c\"}, \"key\": \"set\", \"fields\": [\"set_abbre\"]}}, {\"lookup\": \"set\", \"from\": {\"data\": {\"name\": \"data-505e5811aee1465cb96d6f7eef611457\"}, \"key\": \"set\", \"fields\": [\"set_order\"]}}, {\"filter\": {\"selection\": \"selector013\"}}, {\"window\": [{\"op\": \"distinct\", \"field\": \"set\", \"as\": \"set_order\"}], \"frame\": [null, 0], \"sort\": [{\"field\": \"set_order\"}]}, {\"filter\": \"(datum['is_intersect'] === 1)\"}], \"width\": 300}], \"resolve\": {\"scale\": {\"y\": \"shared\"}}, \"spacing\": 5}], \"data\": {\"name\": \"data-b01a91d3d2edac078fe4e366837cf262\"}, \"spacing\": 20, \"title\": {\"text\": \"Shared Mutations of COVID Variants\", \"subtitle\": [\"Story & Data: https://covariants.org/shared-mutations\", \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"], \"fontSize\": 20, \"fontWeight\": 500, \"subtitleColor\": \"#3A3A3A\", \"subtitleFontSize\": 14}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.0.json\", \"datasets\": {\"data-b01a91d3d2edac078fe4e366837cf262\": [{\"intersection_id\": 3, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 1, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 4, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 1, \"degree\": 5, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 2, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 10, \"count\": 4, \"degree\": 2, \"set\": \"Alpha\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 6, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 7, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 7, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 26, \"degree\": 0, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 26, \"degree\": 1, \"set\": \"Alpha\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 1, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 4, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 1, \"degree\": 5, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 2, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 4, \"degree\": 2, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 6, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 1}, {\"intersection_id\": 2, \"count\": 7, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 7, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 26, \"degree\": 0, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 26, \"degree\": 1, \"set\": \"Beta\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 5, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 1, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 4, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 1, \"degree\": 5, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 2, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 4, \"degree\": 2, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 6, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 7, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 7, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 1}, {\"intersection_id\": 0, \"count\": 26, \"degree\": 0, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 26, \"degree\": 1, \"set\": \"Gamma\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 5, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 7, \"count\": 1, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 4, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 12, \"count\": 1, \"degree\": 5, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 2, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 4, \"degree\": 2, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 6, \"count\": 6, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 7, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 1}, {\"intersection_id\": 4, \"count\": 7, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 26, \"degree\": 0, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 26, \"degree\": 1, \"set\": \"Delta\", \"is_intersect\": 0}, {\"intersection_id\": 3, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 5, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 7, \"count\": 1, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 11, \"count\": 1, \"degree\": 4, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 12, \"count\": 1, \"degree\": 5, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 8, \"count\": 2, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 9, \"count\": 4, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 10, \"count\": 4, \"degree\": 2, \"set\": \"Omicron\", \"is_intersect\": 1}, {\"intersection_id\": 6, \"count\": 6, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 2, \"count\": 7, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 4, \"count\": 7, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 0, \"count\": 26, \"degree\": 0, \"set\": \"Omicron\", \"is_intersect\": 0}, {\"intersection_id\": 1, \"count\": 26, \"degree\": 1, \"set\": \"Omicron\", \"is_intersect\": 1}], \"data-58b9e545af6da95f54e5bee53e97fc6c\": [{\"set\": \"Alpha\", \"set_abbre\": \"Al\"}, {\"set\": \"Beta\", \"set_abbre\": \"Be\"}, {\"set\": \"Gamma\", \"set_abbre\": \"Ga\"}, {\"set\": \"Delta\", \"set_abbre\": \"De\"}, {\"set\": \"Omicron\", \"set_abbre\": \"Om\"}], \"data-505e5811aee1465cb96d6f7eef611457\": [{\"set\": \"Alpha\", \"set_order\": 1}, {\"set\": \"Beta\", \"set_order\": 2}, {\"set\": \"Gamma\", \"set_order\": 3}, {\"set\": \"Delta\", \"set_order\": 4}, {\"set\": \"Omicron\", \"set_order\": 5}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.VConcatChart(...)"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "UpSetAltair(\n",
    "    data=df.copy(),\n",
    "    title=\"Shared Mutations of COVID Variants\",\n",
    "    subtitle=[\n",
    "        \"Story & Data: https://covariants.org/shared-mutations\",\n",
    "        \"Altair-based UpSet Plot: https://github.com/hms-dbmi/upset-altair-notebook\"\n",
    "    ],\n",
    "    sets=[\"Alpha\", \"Beta\", \"Gamma\", \"Delta\", \"Omicron\"],\n",
    "    abbre=[\"Al\", \"Be\", \"Ga\", \"De\", \"Om\"],\n",
    "    sort_by=\"frequency\",\n",
    "    sort_order=\"ascending\",\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3 (ipykernel)",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.7"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 4
}