Metadata table

[mrvollger]

Hi,

I have a suggestion for this github. I think it would be an important resource to maintain a metadata table with all the information we have for each of these samples. Some things I can think of of the top of my head:

1. Sample
2. Gender
3. Super population
4. Population
5. Mother
6. Family ID
7. Father
8. Siblings
9. Phenotype
10. AWS link for HiFi
11. AWS link for ONT
12. AWS link for Hi-C
13. AWS link for Strand-Seq
14. AWS link for BioNano
15. Coverage statistics for all read technologies
16. AWS link maternal Illumina reads
17. AWS link paternal Illumina reads

This will probably be a tedious task but I think it will improve access to the data. I have attached a table that I have been maintaining with population and super population information for all the HiFi samples I know of in case it is helpful in getting started.

Let me know what you think.

Best,
Mitchell

	Sample	Super Population	Population
1	HG00438	EAS	Southern Han Chinese
2	HG00514	EAS	Southern Han Chinese
3	HG00621	EAS	Southern Han Chinese
4	HG00673	EAS	Southern Han Chinese
5	HG00733	AMR	Puerto Ricans from Puerto Rico
6	HG00735	AMR	Puerto Ricans from Puerto Rico
7	HG00741	AMR	Puerto Ricans from Puerto Rico
8	HG01071	AMR	Puerto Ricans from Puerto Rico
9	HG01106	AMR	Puerto Ricans from Puerto Rico
10	HG01109	AMR	Puerto Ricans from Puerto Rico
11	HG01123	AMR	Colombians from Medellin, Colombia
12	HG01175	AMR	Puerto Ricans from Puerto Rico
13	HG01243	AMR	Puerto Ricans from Puerto Rico
14	HG01258	AMR	Colombians from Medellin, Colombia
15	HG01358	AMR	Colombians from Medellin, Colombia
16	HG01361	AMR	Colombians from Medellin, Colombia
17	HG01891	AFR	African Caribbeans in Barbados
18	HG01928	AMR	Peruvians from Lima, Peru
19	HG01952	AMR	Peruvians from Lima, Peru
20	HG01978	AMR	Peruvians from Lima, Peru
21	HG02080	EAS	Kinh in Ho Chi Minh City, Vietnam
22	HG02148	AMR	Peruvians from Lima, Peru
23	HG02257	AFR	African Caribbeans in Barbados
24	HG02486	AFR	African Caribbeans in Barbados
25	HG02559	AFR	African Caribbeans in Barbados
26	HG02572	AFR	Gambian in Western Divisions in the Gambia
27	HG02622	AFR	Gambian in Western Divisions in the Gambia
28	HG02630	AFR	Gambian in Western Divisions in the Gambia
29	HG02717	AFR	Gambian in Western Divisions in the Gambia
30	HG02723	AFR	Gambian in Western Divisions in the Gambia
31	HG02818	AFR	Gambian in Western Divisions in the Gambia
32	HG02886	AFR	Gambian in Western Divisions in the Gambia
33	HG03125	AFR	Esan in Nigeria
34	HG03453	AFR	Mende in Sierra Leone
35	HG03486	AFR	Mende in Sierra Leone
36	HG03492	SAS	Punjabi from Lahore, Pakistan
37	HG03516	AFR	Esan in Nigeria
38	HG03540	AFR	Gambian in Western Divisions in the Gambia
39	HG03579	AFR	Mende in Sierra Leone
40	NA12878	EUR	Utah Residents (CEPH) with Northern and Western European Ancestry
41	HG002	EUR	Ashkenazi
42	NA18906	AFR	Yoruba in Ibadan, Nigeria
43	NA19240	AFR	Yoruba in Ibadan, Nigeria
44	NA20129	AFR	Americans of African Ancestry in SW USA
45	NA21309	AFR	Massai, Kenya