From de547f733e81d23861089e280db032eed585502a Mon Sep 17 00:00:00 2001
From: Istvan Albert <istvan.albert@gmail.com>
Date: Thu, 9 Dec 2021 20:42:43 -0500
Subject: [PATCH 1/4] Create github-actions-demo.yml

---
 .github/workflows/github-actions-demo.yml | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)
 create mode 100644 .github/workflows/github-actions-demo.yml

diff --git a/.github/workflows/github-actions-demo.yml b/.github/workflows/github-actions-demo.yml
new file mode 100644
index 0000000..711d62e
--- /dev/null
+++ b/.github/workflows/github-actions-demo.yml
@@ -0,0 +1,17 @@
+name: GitHub Actions Demo
+on: [push]
+jobs:
+  Explore-GitHub-Actions:
+    runs-on: ubuntu-latest
+    steps:
+      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
+      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
+      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
+      - name: Check out repository code
+        uses: actions/checkout@v2
+      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
+      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
+      - name: List files in the repository
+        run: |
+          ls ${{ github.workspace }}
+      - run: echo "🍏 This job's status is ${{ job.status }}."

From f085ac05b34fa687ad7c76eeaebedf2b32667b1c Mon Sep 17 00:00:00 2001
From: Istvan Albert <istvan.albert@gmail.com>
Date: Thu, 9 Dec 2021 20:54:06 -0500
Subject: [PATCH 2/4] Update and rename github-actions-demo.yml to test.yml

---
 .github/workflows/github-actions-demo.yml | 17 ---------------
 .github/workflows/test.yml                | 25 +++++++++++++++++++++++
 2 files changed, 25 insertions(+), 17 deletions(-)
 delete mode 100644 .github/workflows/github-actions-demo.yml
 create mode 100644 .github/workflows/test.yml

diff --git a/.github/workflows/github-actions-demo.yml b/.github/workflows/github-actions-demo.yml
deleted file mode 100644
index 711d62e..0000000
--- a/.github/workflows/github-actions-demo.yml
+++ /dev/null
@@ -1,17 +0,0 @@
-name: GitHub Actions Demo
-on: [push]
-jobs:
-  Explore-GitHub-Actions:
-    runs-on: ubuntu-latest
-    steps:
-      - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
-      - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
-      - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
-      - name: Check out repository code
-        uses: actions/checkout@v2
-      - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
-      - run: echo "🖥️ The workflow is now ready to test your code on the runner."
-      - name: List files in the repository
-        run: |
-          ls ${{ github.workspace }}
-      - run: echo "🍏 This job's status is ${{ job.status }}."
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 0000000..5237741
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,25 @@
+name: Python package
+
+on: [push]
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.8", "3.9"]
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+      - name: Test with pytest
+        run: |
+          bio test

From c351edb8f0e85d2d2a300a398c4f173c5b2177c2 Mon Sep 17 00:00:00 2001
From: Istvan Albert <istvan.albert@gmail.com>
Date: Thu, 9 Dec 2021 21:11:04 -0500
Subject: [PATCH 3/4] Update test.yml

---
 .github/workflows/test.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 5237741..e795d8d 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -8,7 +8,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.8", "3.9"]
+        python-version: ["3.8"]
 
     steps:
       - uses: actions/checkout@v2
@@ -22,4 +22,4 @@ jobs:
           pip install -r requirements.txt
       - name: Test with pytest
         run: |
-          bio test
+          python -m biorun test

From 01227e88d2700d2887f5729468422a9ad70a6f35 Mon Sep 17 00:00:00 2001
From: Istvan Albert <istvan.albert@gmail.com>
Date: Thu, 9 Dec 2021 21:14:16 -0500
Subject: [PATCH 4/4] Update test.yml

---
 .github/workflows/test.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index e795d8d..6a54d57 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -20,6 +20,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install -r requirements.txt
-      - name: Test with pytest
+          python setup.py develop
+      - name: Run the tests
         run: |
-          python -m biorun test
+           bio test