DESCRIPTION

Type: Package
Package: phenomenalist
Title: Analysis Toolkit for PhenoCycler (CODEX) Data in R
Version: 0.0.0.9003
Authors@R: 
    person("Igor", "Dolgalev", , "igor.dolgalev@nyumc.org", role = c("aut", "cre"))
Description: A collection of tools for cleaning, clustering, and plotting
    PhenoCycler (CODEX) data.
License: MIT + file LICENSE
URL: https://igordot.github.io/phenomenalist/
BugReports: https://github.com/igordot/phenomenalist/issues
Depends:
    ggplot2,
    R (>= 4.1),
    SpatialExperiment
Imports: 
    ComplexHeatmap,
    cowplot,
    data.table,
    dplyr,
    FNN,
    ggsci,
    glue,
    igraph (>= 1.2.7),
    janitor (>= 1.2.0),
    methods,
    RColorBrewer,
    readr,
    rlang (>= 0.4.11),
    scattermore,
    scran,
    scuttle,
    SingleCellExperiment,
    stringr,
    SummarizedExperiment,
    tibble,
    tidyr,
    tidyselect,
    uwot
Suggests: 
    covr,
    knitr,
    remotes,
    rmarkdown,
    roxygen2,
    testthat (>= 3.0.0)
VignetteBuilder: 
    knitr
biocViews:
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)