qbic-pipelines/rnadeseq: Changelog

1.3.2 - Almond Blossoms hotfix II

Added

Bump versions to 1.3.2
write deseq2 table to file

Fixed

Contrast names in report plots
Convert species name to lower case also in report
LogFC is also reported in the report and set in volcano plots

1.3.1 - Almond Blossoms hotfix

Added

Bump versions to 1.3.1

Fixed

Fix bug plots requested boxplots

Changed

1.3.0 - Almond Blossoms

Added

Bump versions to 1.3.0dev
#74 Add option to provide KEGG pathway blacklist
#74 Make quote param optional
#74 Make report options optional (default in assets)
#74 DE gene and pathway summary table

Fixed

#75 Boxplot of normalized counts can also be done from non-DE genes.
#75 More comprehensive variable names and comments

Changed

#74 Pathway analysis only perfomed if at least 2 DE genes

1.2.0 - starry night [11-09-2020]

Added

Added report_options.yml in assets/.

Fixed

Skipping pathway analysis for contrasts with no found DE genes.
Fixed report pvalue typo.

1.1.0 - sunrise

Added

Major changes in handling contrasts.
Major improvements to report.

1.0.0 - candlelight

Initial pre-release of qbic-pipelines/rnadeseq, created with the nf-core template.