bug fixes

Author: ggmarshall

scripts/complete_run.py

@@ -177,12 +177,24 @@ def build_file_dbs(input_files, output_dir):
             "evt": ut.tier_evt_path(setup).replace(os.getenv("PRODENV"), ""),
         },
         "file_format": {
-            "raw": pat.get_pattern_tier(setup, "raw").replace(ut.tier_raw_path(setup), ""),
-            "dsp": pat.get_pattern_tier(setup, "dsp").replace(ut.tier_dsp_path(setup), ""),
-            "hit": pat.get_pattern_tier(setup, "hit").replace(ut.tier_hit_path(setup), ""),
-            "pht": pat.get_pattern_tier(setup, "pht").replace(ut.tier_hit_path(setup), ""),
-            "evt": pat.get_pattern_tier(setup, "evt").replace(ut.tier_evt_path(setup), ""),
-            "tcm": pat.get_pattern_tier(setup, "tcm").replace(ut.tier_tcm_path(setup), ""),
+            "raw": pat.get_pattern_tier(setup, "raw", check_in_cycle=False).replace(
+                ut.tier_raw_path(setup), ""
+            ),
+            "dsp": pat.get_pattern_tier(setup, "dsp", check_in_cycle=False).replace(
+                ut.tier_dsp_path(setup), ""
+            ),
+            "hit": pat.get_pattern_tier(setup, "hit", check_in_cycle=False).replace(
+                ut.tier_hit_path(setup), ""
+            ),
+            "pht": pat.get_pattern_tier(setup, "pht", check_in_cycle=False).replace(
+                ut.tier_hit_path(setup), ""
+            ),
+            "evt": pat.get_pattern_tier(setup, "evt", check_in_cycle=False).replace(
+                ut.tier_evt_path(setup), ""
+            ),
+            "tcm": pat.get_pattern_tier(setup, "tcm", check_in_cycle=False).replace(
+                ut.tier_tcm_path(setup), ""
+            ),
         },
         "table_format": {
             "raw": "ch{ch:07d}/raw",
@@ -205,12 +217,24 @@ def build_file_dbs(input_files, output_dir):
             "evt": ut.tier_evt_path(setup),
         },
         "file_format": {
-            "raw": pat.get_pattern_tier(setup, "raw").replace(ut.tier_raw_path(setup), ""),
-            "dsp": pat.get_pattern_tier(setup, "dsp").replace(ut.tier_dsp_path(setup), ""),
-            "hit": pat.get_pattern_tier(setup, "hit").replace(ut.tier_hit_path(setup), ""),
-            "pht": pat.get_pattern_tier(setup, "pht").replace(ut.tier_hit_path(setup), ""),
-            "evt": pat.get_pattern_tier(setup, "evt").replace(ut.tier_evt_path(setup), ""),
-            "tcm": pat.get_pattern_tier(setup, "tcm").replace(ut.tier_tcm_path(setup), ""),
+            "raw": pat.get_pattern_tier(setup, "raw", check_in_cycle=False).replace(
+                ut.tier_raw_path(setup), ""
+            ),
+            "dsp": pat.get_pattern_tier(setup, "dsp", check_in_cycle=False).replace(
+                ut.tier_dsp_path(setup), ""
+            ),
+            "hit": pat.get_pattern_tier(setup, "hit", check_in_cycle=False).replace(
+                ut.tier_hit_path(setup), ""
+            ),
+            "pht": pat.get_pattern_tier(setup, "pht", check_in_cycle=False).replace(
+                ut.tier_hit_path(setup), ""
+            ),
+            "evt": pat.get_pattern_tier(setup, "evt", check_in_cycle=False).replace(
+                ut.tier_evt_path(setup), ""
+            ),
+            "tcm": pat.get_pattern_tier(setup, "tcm", check_in_cycle=False).replace(
+                ut.tier_tcm_path(setup), ""
+            ),
         },
         "table_format": {
             "raw": "ch{ch:07d}/raw",

scripts/pars_hit_ecal.py

@@ -164,7 +164,7 @@ def energy_cal_th(
             tail_weight=tail_weight,
         )
         full_object_dict[cal_energy_param].calibrate_parameter(data)
-        results_dict[cal_energy_param] = full_object_dict[energy_param].get_results_dict(data)
+        results_dict[cal_energy_param] = full_object_dict[cal_energy_param].get_results_dict(data)
         hit_dict.update(full_object_dict[cal_energy_param].hit_dict)
         if ~np.isnan(full_object_dict[cal_energy_param].pars).all():
             plot_dict[cal_energy_param] = (

scripts/pars_hit_lq.py

@@ -11,7 +11,7 @@
 import pandas as pd
 from legendmeta import LegendMetadata
 from legendmeta.catalog import Props
-from pygama.math.fitting import gauss_cdf
+from pygama.math.peak_fitting import gauss_cdf
 from pygama.pargen.lq_cal import *  # noqa: F403
 from pygama.pargen.lq_cal import cal_lq
 from pygama.pargen.utils import get_tcm_pulser_ids, load_data

scripts/pars_pht_lqcal.py

@@ -11,7 +11,7 @@
 import pandas as pd
 from legendmeta import LegendMetadata
 from legendmeta.catalog import Props
-from pygama.math.fitting import gauss_cdf
+from pygama.math.peak_fitting import gauss_cdf
 from pygama.pargen.lq_cal import *  # noqa: F403
 from pygama.pargen.lq_cal import cal_lq
 from pygama.pargen.utils import get_tcm_pulser_ids, load_data

scripts/pars_pht_partcal.py

@@ -230,7 +230,7 @@ def run_splitter(files):
 hit_dicts, ecal_results, plot_dict, ecal_obj = partition_energy_cal_th(
     data,
     cal_dict,
-    election_string=f"{kwarg_dict.pop('final_cut_field')}&(~is_pulser)",
+    selection_string=f"{kwarg_dict.pop('final_cut_field')}&(~is_pulser)",
     **kwarg_dict,
 )