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train.py
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import os
os.environ["KMP_DUPLICATE_LIB_OK"]="TRUE"
import glob
import logging
import random
from dataset import *
from losses import *
from models import SEANet
from tensorboardX import SummaryWriter
from torch import nn
from torch.utils.data import DataLoader
from tqdm import tqdm
from utils import visualize, evaluate, create_train_arg_parser
import pickle
import numpy as np
from collections import defaultdict
from torch.optim import lr_scheduler
import scipy.io as sio
from torchtoolbox.tools import mixup_data, mixup_criterion
from sklearn.model_selection import train_test_split
# from albumentations.augmentations import transforms
# from albumentations.core.composition import Compose, OneOf
# from albumentations import RandomRotate90,Resize,Cutout
# from thop import profile
# from torchinfo import summary
##权重初始化
def weights_init(m):
if isinstance(m, nn.Conv2d):
# xavier(m.weight.data)
m.weight.data.normal_(0, 0.01)
if m.weight.data.shape == torch.Size([1, 5, 1, 1]):
# for new_score_weight
torch.nn.init.constant_(m.weight, 0.2)
if m.bias is not None:
m.bias.data.zero_()
#RCF预训练文件
def load_vgg16pretrain(model, vggmodel='./vgg16convs.mat'):
vgg16 = sio.loadmat(vggmodel)
torch_params = model.state_dict()
for k in vgg16.keys():
name_par = k.split('-')
size = len(name_par)
if size == 2:
name_space = name_par[0] + '.' + name_par[1]
data = np.squeeze(vgg16[k])
torch_params[name_space] = torch.from_numpy(data)
model.load_state_dict(torch_params)
def build_model(model_type):
if model_type == "rcf":
model = SEANet(num_classes=1)
return model
if __name__ == "__main__":
args = create_train_arg_parser().parse_args()
args.distance_type = 'dist_contour'
args.train_path = r'D:\LJ2\SBA2\DM_5706\image'
# args.val_path = './XJ_kerl_2/valid/image/'
args.model_type = 'rcf'
args.object_type = 'polyp'
args.save_path = r'D:\LJ2\SBA2\DM_5706\se_dm'
# args.pretrained_model_path = './XJ_new_model_xinzeng/15.pt'
CUDA_SELECT = "cuda:{}".format(args.cuda_no)
log_path = args.save_path + "/summary"
writer = SummaryWriter(log_dir=log_path)
logging.basicConfig(
filename="".format(args.object_type),
filemode="a",
format="%(asctime)s,%(msecs)d %(name)s %(levelname)s %(message)s",
datefmt="%Y-%m-%d %H:%M",
level=logging.INFO,
)
logging.info("")
train_file_names = glob.glob(os.path.join(args.train_path, "*.tif"))
random.shuffle(train_file_names)
img_ids = [os.path.splitext(os.path.basename(p))[0] for p in train_file_names]
train_file, val_file = train_test_split(img_ids, test_size=0.2, random_state=41)
device = torch.device(CUDA_SELECT if torch.cuda.is_available() else "cpu")
print(device)
model = build_model(args.model_type)
# print(summary(model,(1,3,256,256)))
if torch.cuda.device_count() > 0: #本来是0
print("Let's use", torch.cuda.device_count(), "GPUs!")
#model = nn.DataParallel(model)
model = model.to(device)
# To handle epoch start number and pretrained weight
# if args.vgg16_caffe:
# load_vgg16_caffe(model, args.vgg16_caffe) HED
model.apply(weights_init)
load_vgg16pretrain(model) #
# net_parameters_id = {}
net_parameters_id = defaultdict(list)
net = model
for pname, p in net.named_parameters():
print(pname)
if pname in ['conv1_1.weight','conv1_2.weight',
'conv2_1.weight','conv2_2.weight',
'conv3_1.weight','conv3_2.weight','conv3_3.weight',
'conv4_1.weight','conv4_2.weight','conv4_3.weight']:
# print(pname, 'lr:1 de:1')
if 'conv1-4.weight' not in net_parameters_id:
net_parameters_id['conv1-4.weight'] = []
net_parameters_id['conv1-4.weight'].append(p)
elif pname in ['conv_final1.weight','conv_final2.weight']:
# print(pname, 'lr:2 de:0')
net_parameters_id['final1-2.weight'].append(p)
elif pname in ['conv_final1.bias','conv_final2.bias']:
# print(pname, 'lr:2 de:0')
net_parameters_id['final1-2.bias'].append(p)
elif pname in ['conv1_1.bias','conv1_2.bias',
'conv2_1.bias','conv2_2.bias',
'conv3_1.bias','conv3_2.bias','conv3_3.bias',
'conv4_1.bias','conv4_2.bias','conv4_3.bias']:
# print(pname, 'lr:2 de:0')
if 'conv1-4.bias' not in net_parameters_id:
net_parameters_id['conv1-4.bias'] = []
net_parameters_id['conv1-4.bias'].append(p)
elif pname in ['conv5_1.weight','conv5_2.weight','conv5_3.weight']:
# print(pname, 'lr:100 de:1')
if 'conv5.weight' not in net_parameters_id:
net_parameters_id['conv5.weight'] = []
net_parameters_id['conv5.weight'].append(p)
elif pname in ['conv5_1.bias','conv5_2.bias','conv5_3.bias'] :
# print(pname, 'lr:200 de:0')
if 'conv5.bias' not in net_parameters_id:
net_parameters_id['conv5.bias'] = []
net_parameters_id['conv5.bias'].append(p)
elif pname in ['conv1_1_down.weight','conv1_2_down.weight',
'conv2_1_down.weight','conv2_2_down.weight',
'conv3_1_down.weight','conv3_2_down.weight','conv3_3_down.weight',
'conv4_1_down.weight','conv4_2_down.weight','conv4_3_down.weight',
'conv5_1_down.weight','conv5_2_down.weight','conv5_3_down.weight']:
# print(pname, 'lr:0.1 de:1')
if 'conv_down_1-5.weight' not in net_parameters_id:
net_parameters_id['conv_down_1-5.weight'] = []
net_parameters_id['conv_down_1-5.weight'].append(p)
elif pname in ['conv1_1_down.bias','conv1_2_down.bias',
'conv2_1_down.bias','conv2_2_down.bias',
'conv3_1_down.bias','conv3_2_down.bias','conv3_3_down.bias',
'conv4_1_down.bias','conv4_2_down.bias','conv4_3_down.bias',
'conv5_1_down.bias','conv5_2_down.bias','conv5_3_down.bias']:
# print(pname, 'lr:0.2 de:0')
if 'conv_down_1-5.bias' not in net_parameters_id:
net_parameters_id['conv_down_1-5.bias'] = []
net_parameters_id['conv_down_1-5.bias'].append(p)
elif pname in ['score_dsn1.weight','score_dsn2.weight','score_dsn3.weight',
'score_dsn4.weight','score_dsn5.weight']:
# print(pname, 'lr:0.01 de:1')
if 'score_dsn_1-5.weight' not in net_parameters_id:
net_parameters_id['score_dsn_1-5.weight'] = []
net_parameters_id['score_dsn_1-5.weight'].append(p)
elif pname in ['score_dsn1.bias','score_dsn2.bias','score_dsn3.bias',
'score_dsn4.bias','score_dsn5.bias']:
# print(pname, 'lr:0.02 de:0')
if 'score_dsn_1-5.bias' not in net_parameters_id:
net_parameters_id['score_dsn_1-5.bias'] = []
net_parameters_id['score_dsn_1-5.bias'].append(p)
elif pname in ['score_final.weight']:
# print(pname, 'lr:0.001 de:1')
if 'score_final.weight' not in net_parameters_id:
net_parameters_id['score_final.weight'] = []
net_parameters_id['score_final.weight'].append(p)
elif pname in ['score_final.bias']:
# print(pname, 'lr:0.002 de:0')
if 'score_final.bias' not in net_parameters_id:
net_parameters_id['score_final.bias'] = []
net_parameters_id['score_final.bias'].append(p)
elif pname in ['aspp.convs.0.0.weight','aspp.convs.0.1.weight','aspp.convs.1.0.weight','aspp.convs.1.1.weight','aspp.convs.2.0.weight',
'aspp.convs.2.1.weight','aspp.convs.3.0.weight','aspp.convs.3.1.weight','aspp.convs.4.1.weight','aspp.convs.4.2.weight',
'aspp.project.0.weight','aspp.project.1.weight']:
# print(pname, 'lr:0.002 de:0')
if 'aspp1-12.weight' not in net_parameters_id:
net_parameters_id['aspp1-12.weight'] = []
net_parameters_id['aspp1-12.weight'].append(p)
elif pname in ['aspp.convs.0.1.bias','aspp.convs.1.1.bias','aspp.convs.2.1.bias','aspp.convs.3.1.bias',
'aspp.convs.4.2.bias','aspp.project.1.bias']:
# print(pname, 'lr:0.002 de:0')
if 'aspp1-6.bias' not in net_parameters_id:
net_parameters_id['aspp1-6.bias'] = []
net_parameters_id['aspp1-6.bias'].append(p)
elif pname in ['aspp1.convs.0.0.weight','aspp1.convs.0.1.weight','aspp1.convs.1.0.weight','aspp1.convs.1.1.weight','aspp1.convs.2.0.weight',
'aspp1.convs.2.1.weight','aspp1.convs.3.0.weight','aspp1.convs.3.1.weight','aspp1.convs.4.1.weight','aspp1.convs.4.2.weight',
'aspp1.project.0.weight','aspp1.project.1.weight']:
# print(pname, 'lr:0.002 de:0')
if 'as1-12.weight' not in net_parameters_id:
net_parameters_id['as1-12.weight'] = []
net_parameters_id['as1-12.weight'].append(p)
elif pname in ['aspp1.convs.0.1.bias','aspp1.convs.1.1.bias','aspp1.convs.2.1.bias','aspp1.convs.3.1.bias',
'aspp1.convs.4.2.bias','aspp1.project.1.bias']:
# print(pname, 'lr:0.002 de:0')
if 'as1-6.bias' not in net_parameters_id:
net_parameters_id['as1-6.bias'] = []
net_parameters_id['as1-6.bias'].append(p)
elif pname in ['center.block.1.conv.weight','dec5.block.1.conv.weight','dec5.block.2.conv.weight','dec4.block.1.conv.weight','dec4.block.2.conv.weight','dec3.block.2.conv.weight','dec3.block.1.conv.weight',
'dec2.block.2.conv.weight','dec2.block.1.conv.weight','dec1.conv.weight',' xdf.conv.weight','center.block.2.conv.weight',
'center.block.3.fc.0.weight','center.block.3.fc.2.weight','dec5.block.3.fc.0.weight','dec5.block.3.fc.2.weight','dec4.block.3.fc.0.weight',
'dec4.block.3.fc.2.weight','dec3.block.3.fc.0.weight','dec3.block.3.fc.2.weight','dec2.block.3.fc.0.weight','dec2.block.3.fc.2.weight']:
# print(pname, 'lr:0.002 de:0')
if 'dec1-22.weight' not in net_parameters_id:
net_parameters_id['dec1-22.weight'] = []
net_parameters_id['dec1-22.weight'].append(p)
elif pname in ['center.block.1.conv.bias','dec5.block.1.conv.bias','dec5.block.2.conv.bias','dec4.block.1.conv.bias','dec4.block.2.conv.bias','dec3.block.2.conv.bias','dec3.block.1.conv.bias',
'dec2.block.2.conv.bias','dec2.block.1.conv.bias','dec1.conv.bias',' xdf.conv.bias','center.block.2.conv.bias']:
# print(pname, 'lr:0.002 de:0')
if 'dec1-12.bias' not in net_parameters_id:
net_parameters_id['dec1-12.bias'] = []
net_parameters_id['dec1-12.bias'].append(p)
optimizer = torch.optim.SGD([
{'params': net_parameters_id['conv1-4.weight'] , 'lr': args.lr*1 , 'weight_decay': args.weight_decay},
{'params': net_parameters_id['conv1-4.bias'] , 'lr': args.lr*2 , 'weight_decay': 0.},
{'params': net_parameters_id['conv5.weight'] , 'lr': args.lr*10 , 'weight_decay': args.weight_decay},
{'params': net_parameters_id['conv5.bias'] , 'lr': args.lr*20 , 'weight_decay': 0.},
{'params': net_parameters_id['conv_down_1-5.weight'], 'lr': args.lr*0.1 , 'weight_decay': args.weight_decay},
{'params': net_parameters_id['conv_down_1-5.bias'] , 'lr': args.lr*0.2 , 'weight_decay': 0.},
{'params': net_parameters_id['score_dsn_1-5.weight'], 'lr': args.lr*0.01 , 'weight_decay': args.weight_decay},
{'params': net_parameters_id['score_dsn_1-5.bias'] , 'lr': args.lr*0.02 , 'weight_decay': 0.},
{'params': net_parameters_id['score_final.weight'] , 'lr': args.lr*0.001, 'weight_decay': args.weight_decay},
{'params': net_parameters_id['score_final.bias'] , 'lr': args.lr*0.002, 'weight_decay': 0.},
{'params': awl.parameters(),'lr': args.lr}
], lr=args.lr, momentum=args.momentum, weight_decay=args.weight_decay)
scheduler = lr_scheduler.StepLR(optimizer, step_size=args.stepsize, gamma=args.gamma)
epoch_start = "0"
if args.use_pretrained:
print("Loading Model {}".format(os.path.basename(args.pretrained_model_path)))
model.load_state_dict(torch.load(args.pretrained_model_path))
epoch_start = os.path.basename(args.pretrained_model_path).split(".")[0]
print(epoch_start)
#print(args.use_pretrained)
trainLoader = DataLoader(
DatasetImageMaskContourDist(args.train_path,train_file, args.distance_type),
batch_size=args.batch_size,drop_last=False, shuffle=True
)
devLoader = DataLoader(
DatasetImageMaskContourDist(args.train_path,val_file, args.distance_type),drop_last=False,shuffle=False
)
displayLoader = DataLoader(
DatasetImageMaskContourDist(args.train_path,val_file, args.distance_type),
batch_size=args.val_batch_size,drop_last=False,shuffle=False
)
optimizer1 = Apollo([{'params': net_parameters_id['final1-2.weight'],'lr': args.lr1},
{'params': net_parameters_id['dec1-22.weight'],'lr': args.lr1},
{'params': net_parameters_id['dec1-12.bias'], 'lr': args.lr1},
{'params': net_parameters_id['final1-2.bias'], 'lr': args.lr1},
{'params': net_parameters_id['aspp1-12.weight'], 'lr': args.lr1},
{'params': net_parameters_id['aspp1-6.bias'], 'lr': args.lr1},
{'params': net_parameters_id['as1-12.weight'], 'lr': args.lr1},
{'params': net_parameters_id['as1-6.bias'], 'lr': args.lr1}], lr=args.lr1)
# scheduler1 = lr_scheduler.StepLR(optimizer1, step_size=args.stepsize, gamma=args.gamma)
# scheduler1 = torch.optim.lr_scheduler.CosineAnnealingLR(optimizer1, int(1e10), eta_min=1e-5)
for epoch in tqdm(
range(int(epoch_start) + 1, int(epoch_start) + 1 + args.num_epochs)
):
global_step = epoch * len(trainLoader)
running_loss = 0.0
counter = 0
for i, (img_file_name, inputs, targets1, targets2,targets3) in enumerate(
tqdm(trainLoader)
):
model.train()
inputs = inputs.to(device)
targets1 = targets1.to(device).float()
targets2 = targets2.to(device).float()
targets3 = targets3.to(device).float()
counter += 1
###mix_up，from torchtoolbox.tools import mixup_data, mixup_criterion（pip install torchtoolbox)
# alpha=0.2
# data1, labels_a, labels_b, lam1 = mixup_data(inputs, targets1, alpha)
# data2, labels_c, labels_d, lam2 = mixup_data(inputs, targets2, alpha)
# data3, labels_e, labels_f, lam3 = mixup_data(inputs, targets3, alpha)
criterion3 = nn.MSELoss()
criterion1 = BCEDiceLoss()
criterion2 = RCFloss()
with torch.set_grad_enabled(True):
output1, output2, output3 = model(inputs.float())
loss1 = criterion1(output1,targets1)
loss2 = criterion2(output2,targets2)
loss3 = criterion3(output3,targets3)
# loss1 = mixup_criterion(criterion1, output1, labels_a, labels_b, lam1)
# loss2 = mixup_criterion(criterion2, output2, labels_c, labels_d, lam2)
# loss3 = mixup_criterion(criterion3, output3, labels_e, labels_f, lam3)
loss = awl(loss1,loss3)
loss = loss + loss2
loss = loss / args.itersize
loss.backward()
if counter == args.itersize:
optimizer.step()
optimizer.zero_grad()
optimizer1.step()
optimizer1.zero_grad()
counter = 0
writer.add_scalar("loss", loss.item(), epoch)
running_loss += loss.item() * inputs.size(0)
epoch_loss = running_loss / len(train_file_names)
scheduler.step()
# scheduler1.step()
# print(epoch_loss)
if epoch % 1 == 0:
dev_loss, dev_time = evaluate(device, epoch, model, devLoader, writer)
writer.add_scalar("valid overall accuracy", dev_loss, epoch)
visualize(device, epoch, model, displayLoader, writer, args.val_batch_size)
print("Global Loss:{} Val Loss:{}".format(epoch_loss, dev_loss))
else:
print("Global Loss:{} ".format(epoch_loss))
logging.info("epoch:{} train_loss:{} ".format(epoch, epoch_loss))
if epoch % 5 == 0:
torch.save(
model.state_dict(), os.path.join(args.save_path, str(epoch) + ".pt")
)