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config_env.yml
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name: rseq
channels:
- agbiome
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- bbtools=37.62=0
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- bx-python=0.8.13=py38h024e602_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.16.0=ha00ac49_1009
- certifi=2021.10.8=py38h578d9bd_1
- cycler=0.11.0=pyhd8ed1ab_0
- fastqc=0.11.9=hdfd78af_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.96=ha180cfb_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.29.1=py38h497a2fe_0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- future=0.18.2=py38h578d9bd_4
- gettext=0.19.8.1=h73d1719_1008
- giflib=5.2.1=h36c2ea0_2
- graphite2=1.3.13=h58526e2_1001
- harfbuzz=3.4.0=hb4a5f5f_0
- htseq=1.99.2=py38h803c66d_1
- htslib=1.14=h9093b5e_0
- icu=69.1=h9c3ff4c_0
- java-jdk=7.0.91=1
- jbig=2.1=h7f98852_2003
- jpeg=9e=h7f98852_0
- kiwisolver=1.3.2=py38h1fd1430_1
- krb5=1.19.2=hcc1bbae_3
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=2.2.1=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libcurl=7.81.0=h2574ce0_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=11.2.0=h1d223b6_12
- libgfortran-ng=11.2.0=h69a702a_12
- libgfortran5=11.2.0=h5c6108e_12
- libglib=2.70.2=h174f98d_4
- libgomp=11.2.0=h1d223b6_12
- libiconv=1.16=h516909a_0
- libimagequant=2.17.0=h7f98852_1
- liblapack=3.9.0=13_linux64_openblas
- libnghttp2=1.46.0=h812cca2_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_12
- libtiff=4.3.0=hf544144_1
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- matplotlib-base=3.5.1=py38hf4fb855_0
- munkres=1.1.4=pyh9f0ad1d_0
- ncurses=6.2=h58526e2_4
- numpy=1.22.2=py38h6ae9a64_0
- openjdk=8.0.312=h7f98852_0
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1l=h7f98852_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.1=py38h43a58ef_0
- pango=1.50.3=h9967ed3_0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- pillow=9.0.1=py38he2f12e7_1
- pip=22.0.3=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pybigwig=0.3.18=py38h5ebd311_1
- pybktree=1.1=pyh9f0ad1d_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pysam=0.16.0.1=py38hf7546f9_3
- python=3.8.12=hb7a2778_2_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-lzo=1.14=py38h86e1cee_0
- python_abi=3.8=2_cp38
- pytz=2021.3=pyhd8ed1ab_0
- r-base=3.2.2=0
- readline=8.1=h46c0cb4_0
- regex=2022.1.18=py38h497a2fe_0
- rseqc=4.0.0=py38h4a8c8d9_1
- samtools=1.14=hb421002_0
- scipy=1.8.0=py38h56a6a73_1
- setuptools=60.9.3=py38h578d9bd_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.37.0=h9cd32fc_0
- star=2.7.10a=h9ee0642_0
- tk=8.6.12=h27826a3_0
- umi_tools=1.1.2=py38h4a8c8d9_0
- unicodedata2=14.0.0=py38h497a2fe_0
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
prefix: /home/asanchezb/mambaforge/envs/rseq