| Authors: | Jacob Pfeil
Apexa Modi |
|---|---|
| Contact: | Jacob Pfiel (jpfeil@ucsc.edu), Apexa Modi (modia@email.chop.edu) |
| Organization: | UCSC, CHOP |
| Status: | In-process |
| Date: | 2025-03-03 |
This repo contains code for:
- Tumormap clustering and GSEA
- Create publication quality figures.
- fgsea-analysis-stan-v8-tiger-2018-08-26.ipynb:
- analyze-post-stan-v8-2019-01-20.ipynb:
- make-stan-input-v8-2019-01-20.ipynb:
- multilevel-pdx-model-v8.stan:
- PPTC_GSEA_FigureCode_Final.Rmd: Creates pathway enrichment heatmap Figure 6C