From 4130475cbda335ca421332ac07b5b5b164e81e0b Mon Sep 17 00:00:00 2001
From: Riley-Grindle <122935497+Riley-Grindle@users.noreply.github.com>
Date: Fri, 20 Sep 2024 11:10:33 -0400
Subject: [PATCH] segmentation.csv for tests

---
 assets/samplesheet.csv  |  8 ++++----
 assets/segmentation.csv | 42 +++++------------------------------------
 2 files changed, 9 insertions(+), 41 deletions(-)

diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
index 04299d0..5bd6606 100644
--- a/assets/samplesheet.csv
+++ b/assets/samplesheet.csv
@@ -1,5 +1,5 @@
 id,data_directory,mt_cc_rm_genes
-0dpa,${projectDir}/assets/test_data/0dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
-1dpa,${projectDir}/assets/test_data/1dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
-2dpa,${projectDir}/assets/test_data/2dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
-4dpa,${projectDir}/assets/test_data/4dpa/,${projectDir}/auxillaryGeneFiles/danioRerio.aux.features.csv
+0dpa,assets/test_data/0dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
+1dpa,assets/test_data/1dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
+2dpa,assets/test_data/2dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
+4dpa,assets/test_data/4dpa/,auxillaryGeneFiles/danioRerio.aux.features.csv
diff --git a/assets/segmentation.csv b/assets/segmentation.csv
index 0cea0ba..522fc39 100644
--- a/assets/segmentation.csv
+++ b/assets/segmentation.csv
@@ -1,37 +1,5 @@
-id,kidney,spleen,lungs,all
-Old_O1_kidney_88w_rep1,true,false,false,true
-Old_O1_lung_88w_rep1,false,false,true,true
-Old_O1_lung_88w_rep2,false,false,true,true
-Old_O1_spleen_88w_rep1,false,true,false,true
-Old_O1_spleen_88w_rep2,false,true,false,true
-Old_O2_kidney_91w_rep1,true,false,false,true
-Old_O2_kidney_91w_rep2,true,false,false,true
-Old_O2_lung_91w_rep1,false,false,true,true
-Old_O2_lung_91w_rep2,false,false,true,true
-Old_O2_spleen_91w_rep1,false,true,false,true
-Old_O2_spleen_91w_rep2,false,true,false,true
-Old_O3_kidney_93w_rep1,true,false,false,true
-Old_O3_lung_93w_rep1,false,false,true,true
-Old_O3_spleen_93w_rep1,false,true,false,true
-Old_O3_spleen_93w_rep2,false,true,false,true
-Young_Y1_kidney_29w_rep1,true,false,false,true
-Young_Y1_kidney_29w_rep2,true,false,false,true
-Young_Y1_spleen_29w_rep1,false,true,false,true
-Young_Y3_kidney_31w_rep1,true,false,false,true
-Young_Y3_kidney_31w_rep2,true,false,false,true
-Young_Y3_lung_31w_rep1,false,false,true,true
-Young_Y3_lung_31w_rep2,false,false,true,true
-Young_Y3_spleen_31w_rep1,false,true,false,true
-Young_Y3_spleen_31w_rep2,false,true,false,true
-Young_Y4_kidney_34w_rep1,true,false,false,true
-Young_Y4_kidney_34w_rep2,true,false,false,true
-Young_Y4_lung_34w_rep1,false,false,true,true
-Young_Y4_lung_34w_rep2,false,false,true,true
-Young_Y4_spleen_34w_rep1,false,true,false,true
-Young_Y4_spleen_34w_rep2,false,true,false,true
-Young_Y5_kidney_34w_rep1,true,false,false,true
-Young_Y5_kidney_34w_rep2,true,false,false,true
-Young_Y5_lung_34w_rep1,false,false,true,true
-Young_Y5_lung_34w_rep2,false,false,true,true
-Young_Y5_spleen_34w_rep1,false,true,false,true
-Young_Y5_spleen_34w_rep2,false,true,false,true
\ No newline at end of file
+id,early,late,all
+0dpa,true,false,true
+1dpa,true,false,true
+2dpa,false,true,true
+4dpa,false,true,true