diff --git a/modules/local/plotting.nf b/modules/local/plotting.nf index 3bea17b..020d3b3 100644 --- a/modules/local/plotting.nf +++ b/modules/local/plotting.nf @@ -21,7 +21,7 @@ process DISPLAY_REDUCTION { output: tuple val(meta), path ("*Final.rds"), emit: rds path("*validation.log"), emit: log - path("*.loupe") + path("*.cloupe") path("*.pdf") //path ("versions.yml"), emit: versions @@ -38,7 +38,7 @@ process DISPLAY_REDUCTION { """ pcMax=\$(paste -s <(grep PC $validation_log| grep -E -o "[0-9]") | sed 's|\\t||') - Plotting.R \ + yes | Plotting.R \ $rds_file \ $resolutions \ \$pcMax \